Hi Sung Woo Joo,
I just reag in the MRtrix forum https://community.mrtrix.org/, that dMRI data can't be registered using mrregister. But this post was from 2016, so maybe it works now. Anyway, I created an MITK Tarball with the DReg command line app for you: https://drive.google.com/file/d/1QR4upRMLIiTSmcF7oJsT0CQItLgGeTFi/view?usp=sharing <https://community.mrtrix.org/> Let me know if that works for you! Peter ________________________________ Von: Sung Woo Joo <joota...@gmail.com> Gesendet: Mittwoch, 28. August 2024 13:02:33 An: Neher, Peter Betreff: Re: [Extern] - [mitk-users] MitkDReg command in MITK Diffusion Dear Peter, I appreciate your prompt response. I would like to use MRtrix, and I have read the instructions you sent me. I think that the following steps are needed. 1) reduce the dimensions of DWI images using mrmath 2) register the mean dwi image to the MNI template image using mrregister 3) register the dwi images to the template space using mrconvert (I am not sure) I am not sure that my understanding is correct. It would be very appreciated if you let me know of any webpage that I can refer to. Sincerely Sung Woo Joo 2024년 8월 28일 (수) 오후 6:57, Neher, Peter <p.ne...@dkfz-heidelberg.de<mailto:p.ne...@dkfz-heidelberg.de>>님이 작성: Dear Sung Woo Joo, thank you for your email! It seems like DReg is not included in the installer. You could either build MITK Diffusion yourself and enable the respective command line tools, or use any other registration tool. Other tools that should support this and are pretty straight forward to use are MRtrix and FSL. Here are the links to the respective commands: https://mrtrix.readthedocs.io/en/dev/reference/commands/mrregister.html https://web.mit.edu/fsl_v5.0.10/fsl/doc/wiki/FLIRT(2f)UserGuide.html Let me know if one of these options work for you! If not, we will find another solution. Best, Peter ________________________________ Von: Sung Woo Joo <joota...@gmail.com<mailto:joota...@gmail.com>> Gesendet: Mittwoch, 28. August 2024 11:47:38 An: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net> Betreff: [Extern] - [mitk-users] MitkDReg command in MITK Diffusion To Whom It May Concern, I recently read the article 'Radiomic tractometry reveals tract-specific imaging biomarkers in white matter' published in Nature Communications. Above all, I sincerely appreciate your team providing all the commands described in the Supplementary file. I struggle to find the 'MitkDReg' command in MITK Diffusion, which is needed for MNI registration. I downloaded the latest version of MITK Diffusion from the website and searched the /bin folder. Would you give me some advice on this? Sincerely, Sung Woo Joo
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