The goal is to calculate the minimum spanning tree of the dissimilarity matrix,
where each row represents the set of these special distances from that point
(indexed by row) to every other point in the database (indexed by column), yes.
The diagonal is purposefully non-zero. You shouldn't need the original 100
points, except to verify the output of SciKit's implementation, which doesn't
accept a pre-built dissimilarity matrix.
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