Hi Graham ,
I finally added the lines below in the wsgi script
>>> import nltk
>>> nltk.download('stopwords')
this created a nltk_data directory at the first run
and It now works fine !!!!!!!
Thanks a lot for your help.
Thanks
Eric
Le mardi 22 janvier 2019 17:28:37 UTC+1, Eric Demarqui a écrit :
>
> Libgfortran was also a permission issue : not being accessible by Apache
> as well
>
> I am now facing a similar problem I had when I excuted the first time the
> application with Flask/python
>
> [Tue Jan 22 16:17:16.503173 2019] [wsgi:error] [pid 23077] [remote
> 10.222.160.228:37526] Resource\x1b[93mstopwords\x1b[0m not found.
> [Tue Jan 22 16:17:16.503176 2019] [wsgi:error] [pid 23077] [remote
> 10.222.160.228:37526] Please use the NLTK Downloader to obtain the
> resource:
> [Tue Jan 22 16:17:16.503178 2019] [wsgi:error] [pid 23077] [remote
> 10.222.160.228:37526]
> [Tue Jan 22 16:17:16.503183 2019] [wsgi:error] [pid 23077] [remote
> 10.222.160.228:37526] \x1b[31m>>> import nltk
> [Tue Jan 22 16:17:16.503185 2019] [wsgi:error] [pid 23077] [remote
> 10.222.160.228:37526] >>> nltk.download('stopwords')
>
> At that time, I had to execute under pip3.7 command line
>
> >>> import nltk
>
> >>> nltk.download('stopwords')
>
>
> Should I had the same line in the wsgi script ?
>
> Thanks
> Eric
>
>
> Le mardi 22 janvier 2019 17:05:38 UTC+1, Eric Demarqui a écrit :
>>
>> waoo. great progress Graham ! Thanks for that .
>>
>> Here is the result of the print in wsgi script :
>> [Tue Jan 22 15:31:29.345107 2019] [wsgi:error] [pid 2719] [remote
>> 10.222.160.228:36190]
>> print(os.listdir('/usr/local/lib/python3.7/site-packages/sklearn'))
>> [Tue Jan 22 15:31:29.345121 2019] [wsgi:error] [pid 2719] [remote
>> 10.222.160.228:36190] PermissionError: [Errno 13] Permission denied:
>> '/usr/local/lib/python3.7/site-packages/sklearn'
>>
>> most of the directories where owned by root and I assume that httpd
>> (running with apache account) was not able to access.
>>
>> I changed permissions for directories.
>> I changed permissions for some .so files (as well) as they were not
>> readable.
>>
>> The most recent problem is now :
>>
>> [Tue Jan 22 15:57:49.513715 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] importnumpy.core.numeric as _nx
>> [Tue Jan 22 15:57:49.513719 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] File
>> "/usr/local/lib/python3.7/site-packages/numpy/core/__init__.py", line 26,
>> in <module>
>> [Tue Jan 22 15:57:49.513722 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] raise ImportError(msg)
>> [Tue Jan 22 15:57:49.513731 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] ImportError:
>> [Tue Jan 22 15:57:49.513734 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] Importing the multiarray numpy extension module
>> failed. Most
>> [Tue Jan 22 15:57:49.513737 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] likely you are trying to import a failed build of
>> numpy.
>> [Tue Jan 22 15:57:49.513739 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] If you're working with a numpy git repo, try `git
>> clean -xdf` (removes all
>> [Tue Jan 22 15:57:49.513742 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] files not under version control). Otherwise
>> reinstall numpy.
>> [Tue Jan 22 15:57:49.513744 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858]
>> [Tue Jan 22 15:57:49.513747 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858] Original error was: libgfortran-ed201abd.so.3.0.0:
>> cannot open shared object file: No such file or directory
>> [Tue Jan 22 15:57:49.513750 2019] [wsgi:error] [pid 14006] [remote
>> 10.222.160.228:36858]
>>
>> not sure where this fortran lib should come from ...
>>
>> Eric
>>
>>
>> Le mardi 22 janvier 2019 15:50:18 UTC+1, Graham Dumpleton a écrit :
>>>
>>> It is either going to be an issue with permissions on that package where
>>> it is installed, or SELinux is blocking the Apache process from reading
>>> anything in that directory.
>>>
>>> Try adding to your WSGI script before the imports:
>>>
>>> import os
>>> print(os.listdir('/usr/local/lib/python3.7/site-packages/sklearn'))
>>>
>>> If that errors or shows nothing, would confirm one of the above.
>>>
>>> On 22 Jan 2019, at 7:45 pm, Eric Demarqui <eric.d...@gmail.com> wrote:
>>>
>>> Graham,
>>>
>>> I am getting this :
>>>
>>> # python3.7
>>> Python 3.7.1 (default, Jan 15 2019, 15:00:56)
>>> [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] on linux
>>> Type "help", "copyright", "credits" or "license" for more information.
>>> >>> import sklearn.feature_extraction
>>> /usr/local/lib/python3.7/site-packages/sklearn/feature_extraction/text.py:17:
>>>
>>> DeprecationWarning: Using or importing the ABCs from 'collections' instead
>>> of from 'collections.abc' is deprecated, and in 3.8 it will stop working
>>> from collections import Mapping, defaultdict
>>> >>> print(sklearn.feature_extraction.__file__)
>>>
>>> /usr/local/lib/python3.7/site-packages/sklearn/feature_extraction/__init__.py
>>>
>>> Thx
>>>
>>> Le lundi 21 janvier 2019 20:55:11 UTC+1, Graham Dumpleton a écrit :
>>>>
>>>> From your command line Python interpreter, do:
>>>>
>>>> import sklearn.feature_extraction
>>>> print(sklearn.feature_extraction.__file_)
>>>>
>>>> What do you get?
>>>>
>>>> On 22 Jan 2019, at 3:22 am, Eric Demarqui <eric.d...@gmail.com> wrote:
>>>>
>>>> Thanks Graham,
>>>>
>>>> let me answer your questions .
>>>>
>>>> I compiled mod_wsgi from source (from
>>>> https://github.com/GrahamDumpleton/mod_wsgi/archive/4.6.5.tar.gz)
>>>> My first try was without the python-path in the WSGIDaemonProcess
>>>> directive. but the same error was there without python-path.
>>>> I am not using a virtual environment.
>>>> Here is my python environment :
>>>> Python 3.7.1 (default, Jan 15 2019, 15:00:56)
>>>> [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] on linux
>>>> Type "help", "copyright", "credits" or "license" for more
>>>> information.
>>>> >>> import sys
>>>> >>> sys.path
>>>> ['', '/usr/local/lib/python37.zip', '/usr/local/lib/python3.7',
>>>> '/usr/local/lib/python3.7/lib-dynload',
>>>> '/root/.local/lib/python3.7/site-packages',
>>>> '/usr/local/lib/python3.7/site-packages']
>>>> >>> sys.prefix
>>>> '/usr/local'
>>>> >>>
>>>>
>>>> is the path ok ?
>>>>
>>>> I have just tried your suggestion by adding the directive
>>>> "WSGIRestrictEmbedded" outside the VirtualHost.
>>>> But the same 500 error happens
>>>>
>>>> [Mon Jan 21 13:51:42.193801 2019] [wsgi:error] [pid 12113] [remote
>>>> 10.222.160.228:54376] from sklearn.feature_extraction.text import
>>>> TfidfVectorizer
>>>> [Mon Jan 21 13:51:42.193829 2019] [wsgi:error] [pid 12113] [remote
>>>> 10.222.160.228:54376] ModuleNotFoundError: No module named
>>>> 'sklearn.feature_extraction'
>>>>
>>>> any idea ?
>>>> Thanks
>>>> Eric
>>>>
>>>> Le lundi 21 janvier 2019 12:35:56 UTC+1, Graham Dumpleton a écrit :
>>>>>
>>>>>
>>>>>
>>>>> On 21 Jan 2019, at 9:58 pm, Eric Demarqui <eric.d...@gmail.com> wrote:
>>>>>
>>>>> Hi
>>>>>
>>>>> I have an application using Flask server which is running fine.
>>>>>
>>>>> I want to use now Apache with mod_wsgi on this environment :
>>>>> Apache/2.4.6 (Red Hat Enterprise Linux) mod_wsgi/4.6.5 Python/3.7
>>>>>
>>>>> Here is how my wsgi.conf file looks like :
>>>>>
>>>>> <VirtualHost *>
>>>>> ServerName xxxxxx
>>>>>
>>>>> WSGIDaemonProcess pythonapi user=apache group=apache processes=1
>>>>> threads=5 home=/var/www/html/pythonapi
>>>>> python-path=/usr/local/lib/python3.7/site-packages
>>>>>
>>>>>
>>>>> Are you using system package for mod_wsgi, or are you compiling from
>>>>> source code yourself? The system mod_wsgi package is not going to be for
>>>>> Python 3.7. You would need to uninstall the system package to be able to
>>>>> compile mod_wsgi from source code. So how did you install mod_wsgi?
>>>>>
>>>>> Next issue is that you shouldn’t use python-path to refer to a
>>>>> site-packages directory like that, especially not one in the actual
>>>>> Python
>>>>> installation. If you need to be referring to the one for the actual
>>>>> Python
>>>>> installation, it generally indicates something is wrong with your setup.
>>>>>
>>>>> If using a Python virtual environment you should be using python-home.
>>>>> See:
>>>>>
>>>>>
>>>>> https://modwsgi.readthedocs.io/en/develop/user-guides/virtual-environments.html
>>>>>
>>>>> Even if not using a virtual environment. If the Python is in a non
>>>>> standard location, you should also use python-home but in that case
>>>>> referring to sys.path value for the main Python installation and not that
>>>>> of a virtual environment.
>>>>>
>>>>> I would suggest though when using daemon mode, to add at global scope
>>>>> outside of the VirtualHost:
>>>>>
>>>>> WSGIRestrictEmbedded On
>>>>>
>>>>> This ensures you are using daemon mode.
>>>>>
>>>>> So first up, it looks a bit like you are mixing mod_wsgi compiled for
>>>>> one Python version/installation, with a different Python version or
>>>>> virtual
>>>>> environment created from a different version.
>>>>>
>>>>> Beyond that, because you are RHEL, it could be a SELinux issue, but
>>>>> first confirm how your mod_wsgi is installed.
>>>>>
>>>>> WSGIProcessGroup pythonapi
>>>>>
>>>>> WSGIScriptAlias /servicebotpy
>>>>> /var/www/html/pythonapi/servicebotpy.wsgi
>>>>>
>>>>> <Directory /var/www/html/pythonapi>
>>>>> WSGIApplicationGroup %{GLOBAL}
>>>>> Options Indexes MultiViews FollowSymlinks
>>>>> AllowOverride None
>>>>> Require all granted
>>>>> </Directory>
>>>>> </VirtualHost>
>>>>>
>>>>> mod_wsgi is compiled with same version as of python3.7
>>>>>
>>>>> I am stucked here .
>>>>>
>>>>> [Mon Jan 21 10:32:45.881625 2019] [wsgi:error] [pid 22328] [remote
>>>>> 10.222.160.228:49260] File "/var/www/html/pythonapi/scorer.py",
>>>>> line 5, in <module>
>>>>> [Mon Jan 21 10:32:45.881632 2019] [wsgi:error] [pid 22328] [remote
>>>>> 10.222.160.228:49260] from sklearn.feature_extraction.text import
>>>>> TfidfVectorizer
>>>>> [Mon Jan 21 10:32:45.881656 2019] [wsgi:error] [pid 22328] [remote
>>>>> 10.222.160.228:49260] ModuleNotFoundError: No module named
>>>>> 'sklearn.feature_extraction'
>>>>>
>>>>> Thanks for help
>>>>> Eric
>>>>>
>>>>>
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>>>>>
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