Bugs item #2886428, was opened at 2009-10-26 12:41
Message generated for change (Comment added) made by stmane
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=482468&aid=2886428&group_id=56967
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Category: PFtijah
Group: Pathfinder "stable"
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Roberto Cornacchia (cornuz)
Assigned to: Henning Rode (hrode)
Summary: Assertion in GDKfree_() while indexing with PFTijah
Initial Comment:
While indexing in PFTijah a rathr large collection (2M XML documents, ~75GB in
total),
the following assertion pops up.
Given the size of the data and the IP constraints, I cannot easily provide a
reproducible test here,
but the gdb session is open on my machine at CWI, anyone itching to give it a
go? ;-)
#0 0xa000000000010621 in __kernel_syscall_via_break ()
#1 0x20000000020781c0 in raise () from /lib/libc.so.6.1
#2 0x200000000207a810 in abort () from /lib/libc.so.6.1
#3 0x2000000002068680 in __assert_fail () from /lib/libc.so.6.1
#4 0x20000000014b10f0 in GDKfree_ () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libbat.so.1
#5 0x20000000015b39d0 in merge_getmemh () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libbat.so.1
#6 0x20000000015d0630 in merge_at_oid () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libbat.so.1
#7 0x20000000016481c0 in GDKssort () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libbat.so.1
#8 0x200000000131dfb0 in BATsorder () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libbat.so.1
#9 0x200000000131e8d0 in BATssort () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libbat.so.1
#10 0x200000000007cc30 in CMDssort () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_algebra.so.4
#11 0x200000000006f480 in CMDssort_unpack1538144325 ()
from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_algebra.so.4
#12 0x20000000002ee630 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#13 0x2000000000314640 in interpret_assignment () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#14 0x20000000002f0050 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#15 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#16 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#17 0x20000000002f2ad0 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#18 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#19 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#20 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#21 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#22 0x20000000002ece30 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#23 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#24 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#25 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#26 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#27 0x20000000002ece30 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#28 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#29 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#30 0x20000000001f6360 in CMDcatch () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_builtin.so.4
#31 0x20000000002eeec0 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#32 0x2000000000314220 in interpret_assignment () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#33 0x2000000000314bb0 in interpret_var () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#34 0x20000000002eeff0 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#35 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#36 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#37 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#38 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#39 0x20000000002ece30 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#40 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#41 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#42 0x20000000002f2890 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#43 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#44 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#45 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#46 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#47 0x20000000002ece30 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#48 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#49 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#50 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#51 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#52 0x20000000002ece30 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#53 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#54 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#55 0x20000000002f2890 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#56 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#57 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#58 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#59 0x20000000002f0150 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#60 0x20000000002f91b0 in tuple_interpret_vpval_fival () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#61 0x20000000001b26e0 in doCMDbatloop () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_bat.so.4
#62 0x20000000001a09d0 in CMDbatloop_std_unpack733212973 ()
from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_bat.so.4
#63 0x2000000000317fd0 in interpret_iterator () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#64 0x20000000002ede20 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#65 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#66 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#67 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#68 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#69 0x20000000002ece30 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#70 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#71 0x20000000002f0110 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#72 0x20000000001f6360 in CMDcatch () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_builtin.so.4
#73 0x20000000002eeec0 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#74 0x20000000003147c0 in interpret_assignment () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#75 0x20000000002f0050 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#76 0x2000000000313860 in interpret_seqblock () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#77 0x20000000002f0150 in interpret () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/libmonet.so.4
#78 0x200000000aa69f50 in xquery_tree_exec (ctx=0x60000000001b56e8,
t=0x6000000000d9f648, repeat=0)
at
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/src/pathfinder/runtime/pathfinder.mx:4525
#79 0x200000000aa6b0c0 in xquery_mil_exec (ctx=0x60000000001b56e8,
buf=0x6000000001574c30 "var tijah_scoreDB;\nvar
tijah_dummyPOS;\ntijah_dummyPOS := new (oid, oid);\nvar
tijah_ftiTape;\ntijah_ftiTape := new (str, bat);\nvar xrpc_qid;\nvar
xrpc_caller;\nvar xrpc_hdl;\nvar xrpc_seqnr;\nvar xrpc_timeo"...)
at
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/src/pathfinder/runtime/pathfinder.mx:4583
#80 0x200000000aa6cb00 in xquery_compile_exec (ctx=0x60000000001b56e8,
options=2,
xquery=0x6000000000d17d99
"tijah:create-ft-index((\"clefip2009\"),<TijahOptions
stemmer=\"stopwords-english\" whitelist=\"abstract description invention-title
claim\"/>)\n", is_url=0, prologue=0x200000000d1fe528, query=0x200000000d1fe530,
epilogue=0x200000000d1fe538, module=0x0)
at
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/src/pathfinder/runtime/pathfinder.mx:4746
#81 0x200000000aa80c60 in xquery_prepare (ctx=0x60000000001b56e8,
usec=18635914162,
query=0x6000000000d17d99
"tijah:create-ft-index((\"clefip2009\"),<TijahOptions
stemmer=\"stopwords-english\" whitelist=\"abstract description invention-title
claim\"/>)\n") at
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/src/pathfinder/runtime/pathfinder.mx:6065
#82 0x200000000aa820d0 in xquery_client_engine (mc=0x200000000b1d3818)
at
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/src/pathfinder/runtime/pathfinder.mx:6220
#83 0x200000000b1be270 in mapi_client_engine () from
/space/home/rcornacc/lhm_code/HyServer/MonetDB/MonetDB.stable/MonetDB/lib/MonetDB4/lib/lib_mapi.so.4
#84 0x2000000001be5050 in start_thread () from /lib/libpthread.so.0
#85 0x20000000021acb10 in __clone2 () from /lib/libc.so.6.1
----------------------------------------------------------------------
>Comment By: Stefan Manegold (stmane)
Date: 2009-10-26 12:57
Message:
What excatly does the assertion say?
;-)
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