Hi,
I caught an error (see attached file) at the
remote method invocation of XRPC.
While I'm not sure whether my query is correct or not,
is there imitation of parameters in XRPC?
The query and dataset used in the evaluation
are put on here.
http://db-www.naist.jp/~makoto-y/tmp/xrpc.tgz
Thanks,
Makoto YUI
MAPI = [EMAIL PROTECTED]:50000
QUERY = import module namespace test = "xrpc-test-function"
at "/usr/share/MonetDB/xrpc/export/xrpc-mod.xq";
(: local database :)
declare variable $blast-gb := fn:doc("blast-gb.xml")/result;
declare variable $blast-uniprot := fn:doc("blast-uniprot.xml")/result;
(: remote basebase :)
declare variable $remote-endpoint := "xanadu.naist.jp";
let $gb_entry := (for $e in $blast-gb/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
ERROR = !WARNING: doLoopLiftedRPC: error occurred during RPC call to
"xanadu.naist.jp"
!ERROR: CMDhttp_post: too many parameters.
!ERROR: CMDhttp_post: operation failed.
MAPI = [EMAIL PROTECTED]:50000
QUERY = import module namespace test = "xrpc-test-function"
at "/usr/share/MonetDB/xrpc/export/xrpc-mod.xq";
(: local database :)
declare variable $blast-gb := fn:doc("blast-gb.xml")/result;
declare variable $blast-uniprot := fn:doc("blast-uniprot.xml")/result;
(: remote basebase :)
declare variable $remote-endpoint := "xanadu.naist.jp";
let $gb_entry := (for $e in $blast-gb/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
ERROR = !ERROR: doLoopLiftedRPC: execution failed at all destinations
mapi_query_part:1705:import module namespace test = "xrpc-test-function"
at "/usr/share/MonetDB/xrpc/export/xrpc-mod.xq";
(: local database :)
declare variable $blast-gb := fn:doc("blast-gb.xml")/result;
declare variable $blast-uniprot := fn:doc("blast-uniprot.xml")/result;
(: remote basebase :)
declare variable $remote-endpoint := "xanadu.naist.jp";
let $gb_entry := (for $e in $blast-gb/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
where $hit/Hit_num = 1 and $hit/Hit_hsps/Hsp/Hsp_evalue/text()
<= 1.0e-8
return $e),
$uniprot_entry := (for $e in $blast-uniprot/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
where $hit/Hit_num = 1 and
$hit/Hit_hsps/Hsp/Hsp_evalue/text() <= 1.0e-8
return $e)
where $gb_entry/BlastOutput_query-def/text() =
$uniprot_entry/BlastOutput_query-def/text()
return
<result>
{
let $gb-hit :=
$gb_entry/BlastOutput_iterations/Iteration/Iteration_hits/Hit,
$gb-key := $gb-hit/Hit_gb/text()
return
let $genbank-remote-entries :=
execute at {$remote-endpoint} { test:q1($gb-key) }
for $remote_entry at $pos in $genbank-remote-entries
let $gb_definition := $remote_entry/INSDSeq_definition,
$gb_feature := $remote_entry/INSDSeq_feature-table/INSDFeature,
$blast_evalue := $gb-hit[Hit_gb/text() =
$remote_entry/INSDSeq_accession-version/text()]/Hit_hsps/Hsp/Hsp_evalue
return <genbank num="{ $pos }">{ $blast_evalue, $gb_definition,
$gb_feature } </genbank>
}
</result>
fetch next block: start at:2
got next block: length:269
text:XRPC_Client_Serialisation: 626 microsec
!WARNING: doLoopLiftedRPC: error occurred during RPC call to "xanadu.naist.jp"
!ERROR: CMDhttp_post: too many parameters.
!ERROR: CMDhttp_post: operation failed.
!ERROR: doLoopLiftedRPC: execution failed at all destinations
got complete block:
text:XRPC_Client_Serialisation: 626 microsec
!WARNING: doLoopLiftedRPC: error occurred during RPC call to "xanadu.naist.jp"
!ERROR: CMDhttp_post: too many parameters.
!ERROR: CMDhttp_post: operation failed.
!ERROR: doLoopLiftedRPC: execution failed at all destinations
read_line:XRPC_Client_Serialisation: 626 microsec
allocating new result set
XRPC_Client_Serialisation: 626 microsec
got complete block:
text:!WARNING: doLoopLiftedRPC: error occurred during RPC call to
"xanadu.naist.jp"
!ERROR: CMDhttp_post: too many parameters.
!ERROR: CMDhttp_post: operation failed.
!ERROR: doLoopLiftedRPC: execution failed at all destinations
read_line:!WARNING: doLoopLiftedRPC: error occurred during RPC call to
"xanadu.naist.jp"
allocating new result set
got complete block:
text:!ERROR: CMDhttp_post: too many parameters.
!ERROR: CMDhttp_post: operation failed.
!ERROR: doLoopLiftedRPC: execution failed at all destinations
read_line:!ERROR: CMDhttp_post: too many parameters.
got complete block:
text:!ERROR: CMDhttp_post: operation failed.
!ERROR: doLoopLiftedRPC: execution failed at all destinations
read_line:!ERROR: CMDhttp_post: operation failed.
got complete block:
text:
!ERROR: doLoopLiftedRPC: execution failed at all destinations
read_line:
closing result set
got complete block:
text:!ERROR: doLoopLiftedRPC: execution failed at all destinations
read_line:!ERROR: doLoopLiftedRPC: execution failed at all destinations
allocating new result set
fetch next block: start at:271
got next block: length:0
text:
got complete block:
text:
read_line:
closing result set
closing result set
Timer 1014.527 msec
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