On 06/08/2012 21:09, ashkot wrote:
Hi all,
I am using C# on Mono on Ubuntu and found some code that uses process info
class that allows for executing shell commands.
I have an issue where in a command such as
sudo samtools sort file1.bam file1.sorted
is executed OK, where as the following command is not.
sudo samtools mpileup -uf ref.fasta file1.sorted.bam | bcftools view -bvcg -
file.bcf
Any ideas??
Thanks,
A
What goes wrong? what kind of error do you get?
Is it to do with option parsing or permissions?
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