Just to be clear, by parameter estimation for stochastic models, you mean for 
the purpose of ancestral state reconstruction?

Jacqueline S. Silviria
she/her/hers
The Last King of the Jungle <https://discord.gg/m7KKkuKW>

Department of Earth & Space Science
University of Washington
Seattle, WA, USA
[email protected] <mailto:[email protected]>, [email protected] 
<mailto:[email protected]>

ResearchGate profile <https://www.researchgate.net/profile/J_Silviria>

Sent from my iPhone

> On Sep 8, 2025, at 6:02 AM, Sofia Stroustrup <[email protected]> wrote:
> 
> Dear all, 
> 
> I am wondering whether any of you are aware of a study that investigates the 
> effect of Procrustes alignment on parameter estimation for instance under a 
> Brownian motion or Ornstein-Uhlenbeck process? What I am thinking about is, 
> if we simulate data under a stochastic model, procrustes align the data and 
> then do parameter estimation how does Procrustes alignment affect the 
> estimates. I have not been able to find any study investigating this. 
> 
> Thank you very much for your help! 
> 
> Best regards, 
> Sofia 
> (PhD student at University of Copenhagen)
> 
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