-------- Original Message --------
Subject: Using SHAPE outputs to perform a CVA
Date: Tue, 17 Jun 2008 11:22:28 -0700 (PDT)
From: Catherine Sinfield <[EMAIL PROTECTED]>
Reply-To: [EMAIL PROTECTED]
To: [email protected]
I am using the software SHAPE (Iwata & Ukai, 2002) but I would now like
to carry out a Canonical variates analysis in SAS. I am unsure which
output from the SHAPE software I should be using. I thought I could use
the normalized EF coefficients (maximum harmonic number of 20) but SHAPE
uses the variance-covariance matrix to perform the PCA in Princomp?
Which output from SHAPE should be used and why?
Thank you in advance for your time!
--- On *Mon, 6/16/08, morphmet /<[EMAIL PROTECTED]>/*
wrote:
From: morphmet <[EMAIL PROTECTED]>
Subject: Re: Release of the MorphoJ program
To: "morphmet" <[email protected]>
Date: Monday, June 16, 2008, 3:55 PM
-------- Original Message --------
Subject: Re: Release of the MorphoJ program
Date: Mon, 16 Jun 2008 06:01:37 -0700 (PDT)
From: Mauro Cavalcanti <[EMAIL PROTECTED]>
To: [email protected]
References: <[EMAIL PROTECTED]>
Dear Dr. Klingenberg,
Looks superb and I will soon try it under Ubuntu Linux 8.04 ("Hardy
Heron"). Just a question - does the MorphoJ distribution package
includes the Java source code? Availability of source code is a
pre-condition to enlist software in the Digital Taxonomy
(http://digitaltaxonomy.infobio.net) website.
With best regards,
2008/6/16 morphmet <[EMAIL PROTECTED]>:
>
>
> -------- Original Message --------
> Subject: Release of the MorphoJ program
> Date: Mon, 16 Jun 2008 01:37:56 -0700 (PDT)
> From: Chris Klingenberg <[EMAIL PROTECTED]>
> Reply-To: [EMAIL PROTECTED]
> Organization: University of Manchester
> To: [email protected]
>
> Dear morphometricians
>
> The MorphoJ program package for doing geometric morphometrics, after
> epic delays, is finally ready for public release! The goal of the
> program is to provide a platform for the most important types of
> analyses in geometric morphometrics. The program is written for
both 2D
> and 3D data, with some inevitable differences in the graphical output
> possibilities etc. MorphoJ is available for free under the Apache
> License, Version 2.0.
>
> Features presently implemented in the program include:
>
> -- Procrustes fit for 2D and 3D data with and without object symmetry
> -- Import/export of data sets and supplementary information
> -- Identification of outliers (with choices for including/excluding
> observations and fixing some problems)
> -- Generating covariance matrices ('standard' and pooled
within-group
> covariances)
> -- Principal component analysis
> -- Matrix correlation (including automatic adjustment for
> symmetry/asymmetry for configurations with object symmetry)
> -- Two-block partial least squares
> -- Regression (arbitrary numbers of dependent and independent
variables;
> also pooled within-group regression, e.g. for allometry correction in
> multiple grous)
> -- Canonical variate analysis
> -- Linear discriminant analysis, including cross-validation
> -- Mapping shape variables onto a phylogeny
> -- Various analyses concerning the quantitative genetics of shape and
> selection for shape
>
> Additional features will be included in future releases.
>
> The software is written in Java, and includes external libraries that
> are also written in Java. As a result, the program is more or less
> platform-independent. At the moment, there are distributions of
the test
> versions for Windows, Macintosh OS X (10.4 Tiger and higher) and
> Unix/Linux (tested under Ubuntu Linux only). All what you will
need to
> run it is a recent Java Runtime Environment (minimum Version 5.0) for
> your operating system, which is available for free from
> http://www.java.com (Windows and Unix/Linux) or comes with your
> operating system (Mac; users of Tiger may have to upgrade to
version 5.0).
>
> Further information and links for downloading the software are
available
> from:
> http://www.flywings.org.uk/MorphoJ_page.htm
>
> Online documentation is available from:
> http://www.flywings.org.uk/MorphoJ_guide
>
> I'd like to take this opportunity to thank the various people who
have
> tested MorphoJ in the past few years. Their thoroughness and patience
> are both greatly appreciated.
>
> I hope this will be useful to morphometricians.
>
> Best wishes,
> Chris
>
>
> --
> ***************************************************************
> Christian Peter Klingenberg
> Faculty of Life Sciences
> The University of Manchester
> Michael Smith Building
> Oxford Road
> Manchester M13 9PT
> United Kingdom
>
> Telephone: +44 161 275 3899
> Fax: +44 161 275 5082
> E-mail: [EMAIL PROTECTED]
> Web: http://www.flywings.org.uk
> ***************************************************************
>
>
>
> --
> Replies will be sent to the list.
> For more information visit http://www.morphometrics.org
>
>
--
Dr. Mauro J. Cavalcanti
Departamento de Zoologia
Universidade do Estado do Rio de Janeiro
Rua São Francisco Xavier, 524, CEP 20559-900
Rio de Janeiro, RJ, BRASIL
E-mail: [EMAIL PROTECTED]
Web: http://maurobio.infobio.net
Linux Registered User #473524 * Ubuntu User # 22717
"Life is complex. It consists of real and imaginary parts."
--
Replies will be sent to the list.
For more information visit http://www.morphometrics.org
--
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For more information visit http://www.morphometrics.org
