The arrayspecs function has changed what options it requires (ie does not need byland anymore). Look at the help guide for the functions, i.e. ?arrayspecs
Emma On Tuesday, December 30, 2014, fossilbear <[email protected]> wrote: > > I have a dataset with 2D landmark data and various independent variables. > I have defined the shape as the 26 coordinates and used the following code > coords=as.matrix(file.dat[,-(1-25)])# this works successfully > > shape=arrayspecs(coords, 13,2,byLand=FALSE) #this gives the error message: > > Error in arrayspecs(coords, 15, 2, byLand = FALSE) : > unused argument (byLand = FALSE) > > It used to work in an older code that I used a few months ago. Now it is > giving me the business. Any idea? > > here is my matrix: > X2 X3 X4 X5 X6 X7 > X8 X9 X10 X11 X12 X13 X14 > 1 0.03997963 0.3367198 -0.03365625 0.3014825 -0.07325888 0.1675589 > -0.00201582 0.1198153 0.1103637 0.08943977 0.1048558 0.1349480 0.09306566 > 2 0.03487885 0.3360288 -0.04191770 0.3019065 -0.07568615 0.1773127 > 0.00488312 0.1209543 0.1103113 0.08795262 0.1073037 0.1282006 0.10025810 > 3 0.03122694 0.3335739 -0.03586701 0.2990588 -0.06906252 0.1835084 > -0.00104611 0.1203527 0.1091257 0.08869470 0.1068174 0.1274445 0.09270893 > 4 0.03083083 0.3326056 -0.03908910 0.3004318 -0.07108287 0.1792337 > -0.00165225 0.1319318 0.1058574 0.09170375 0.1092670 0.1310557 0.09552525 > 5 0.01549123 0.3443843 -0.03050719 0.3125263 -0.06838448 0.1700543 > 0.00161769 0.1176949 0.1166828 0.08556727 0.1156704 0.1246849 0.10702841 > 6 0.03307164 0.3389991 -0.03296144 0.3013813 -0.07404540 0.1761324 > -0.00111903 0.1171637 0.1067639 0.08408184 0.1057422 0.1282180 0.08931452 > 7 0.03350312 0.3455607 -0.03805888 0.3055496 -0.07362491 0.1634284 > -0.00363214 0.1194372 0.1135201 0.08189299 0.1086072 0.1212518 0.10258651 > 8 0.03673053 0.3438029 -0.03566788 0.3090075 -0.06750164 0.1667050 > 0.00040803 0.1195644 0.1068360 0.09126465 0.1011679 0.1309072 0.09048932 > 9 0.04514989 0.3445413 -0.03499111 0.3068777 -0.07115699 0.1667978 > -0.00709849 0.1197529 0.1062217 0.08585121 0.1042393 0.1203195 0.09658300 > 10 0.03941113 0.3368754 -0.03614875 0.3014612 -0.07685012 0.1739622 > -0.00373047 0.1255605 0.1052433 0.09168792 0.1046592 0.1267143 0.09835272 > 11 0.04435505 0.3418018 -0.03636860 0.3020457 -0.06808821 0.1652769 > -0.00498531 0.1202878 0.1071845 0.08753606 0.1033531 0.1308717 0.09305898 > 12 0.03382660 0.3410164 -0.02758452 0.3042652 -0.06818370 0.1603699 > 0.00172079 0.1198990 0.1080929 0.08772879 0.1060758 0.1288913 0.09363879 > 13 0.04255165 0.3449338 -0.02981377 0.3073790 -0.07146521 0.1705471 > 0.00037987 0.1213191 0.1065837 0.08106710 0.1042081 0.1237737 0.09461133 > 14 0.03073561 0.3469995 -0.03886375 0.3069022 -0.07383648 0.1655636 > 0.00320057 0.1142681 0.1153341 0.08523485 0.1096984 0.1300842 0.09972374 > 15 0.03833599 0.3468734 -0.02902469 0.3117373 -0.07285814 0.1693639 > -0.00069631 0.1096915 0.1085963 0.08663837 0.1030768 0.1299194 0.08930121 > 16 0.03216115 0.3437012 -0.03285981 0.3067420 -0.07148509 0.1634199 > 0.00288162 0.1189920 0.1071332 0.09068717 0.1053644 0.1296370 0.09244684 > 17 0.03847241 0.3440789 -0.03818560 0.3063814 -0.07395364 0.1627708 > 0.00468873 0.1135445 0.1142731 0.08248338 0.1067443 0.1249139 0.10083024 > 18 0.02843652 0.3421909 -0.03310299 0.3057486 -0.07435036 0.1660656 > 0.00813877 0.1155870 0.1126716 0.09130366 0.1097459 0.1262602 0.09857246 > 19 0.03655065 0.3401477 -0.04381970 0.3032213 -0.07541966 0.1673756 > 0.00183286 0.1177150 0.1120358 0.08981567 0.1061729 0.1334020 0.09264442 > 20 0.03737752 0.3456541 -0.02603089 0.3021693 -0.06887650 0.1696384 > -0.00264276 0.1219772 0.1055129 0.08822826 0.1006278 0.1261045 0.09194974 > 21 0.04189542 0.3451091 -0.02394418 0.3116268 -0.06460292 0.1606836 > 0.00411035 0.1129572 0.1143172 0.07634388 0.1041113 0.1264328 0.10177871 > 22 0.04060854 0.3397505 -0.02108206 0.3040336 -0.06508092 0.1728905 > 0.01063115 0.1132407 0.1100533 0.08138505 0.1043609 0.1259463 0.09475078 > 23 0.04626172 0.3415264 -0.01779378 0.3047242 -0.06208483 0.1691875 > 0.00503913 0.1180950 0.1088386 0.08107183 0.1050709 0.1182668 0.09969513 > 24 0.04233714 0.3412122 -0.02353006 0.3051835 -0.06472309 0.1640181 > 0.00618488 0.1134105 0.1139769 0.08293953 0.1061782 0.1230331 0.10109200 > 25 0.04271343 0.3389914 -0.02348183 0.3040175 -0.06045990 0.1728931 > 0.00982319 0.1142752 0.1102982 0.08126082 0.1001390 0.1252385 0.09596056 > 26 0.04436916 0.3389492 -0.02609471 0.3011717 -0.06847199 0.1740515 > 0.01126975 0.1163778 0.1134961 0.08265127 0.1056537 0.1271954 0.10044545 > 27 0.05455984 0.3485089 -0.02565360 0.3101353 -0.06505627 0.1602461 > 0.00500854 0.1096231 0.1134036 0.08553745 0.1073083 0.1239045 0.09357168 > 28 0.05165666 0.3425469 -0.02352171 0.3048061 -0.06014191 0.1640241 > 0.00604971 0.1148992 0.1114002 0.07946789 0.1022844 0.1254427 0.09833995 > 29 0.04072078 0.3410430 -0.02485538 0.3058620 -0.06404186 0.1627524 > 0.00754545 0.1100311 0.1155905 0.07830467 0.1064910 0.1226727 0.10138713 > 30 0.03635544 0.3421183 -0.02998222 0.3069268 -0.06370802 0.1600275 > 0.00558380 0.1093057 0.1143967 0.08506506 0.1104158 0.1189903 0.10284352 > 31 0.04276831 0.3413121 -0.02787562 0.3075329 -0.06701036 0.1562715 > 0.00724861 0.1141454 0.1147125 0.08724082 0.1092162 0.1259823 0.10174959 > 32 0.04267078 0.3422585 -0.02495263 0.3066111 -0.07137937 0.1657216 > 0.00725336 0.1133871 0.1168181 0.08321820 0.1105658 0.1249473 0.10987356 > 33 0.03785529 0.3418552 -0.02234487 0.3071374 -0.05891185 0.1541679 > 0.00295418 0.1169891 0.1148860 0.08391562 0.1081971 0.1212720 0.10513816 > 34 0.04690142 0.3452982 -0.01657251 0.3130616 -0.06051909 0.1520864 > -0.00418222 0.1171967 0.1087307 0.07975381 0.1056744 0.1194259 0.09828256 > 35 0.03537518 0.3395409 -0.03178086 0.3004560 -0.06577339 0.1651297 > 0.00555599 0.1197652 0.1158655 0.08489112 0.1135253 0.1217623 0.10714064 > 36 0.03331337 0.3375084 -0.02284691 0.3020641 -0.06019020 0.1678390 > 0.00274706 0.1089553 0.1156751 0.08547450 0.1131530 0.1200141 0.10443155 > 37 0.05038900 0.3397097 -0.02940865 0.3091900 -0.05978659 0.1636689 > 0.00603012 0.1136749 0.1082451 0.08428647 0.1038443 0.1284609 0.09238000 > 38 0.04389536 0.3390996 -0.02551738 0.3005577 -0.06032217 0.1721630 > -0.00237285 0.1175990 0.1119114 0.08770890 0.1095832 0.1254391 0.09409337 > 39 0.04545170 0.3390827 -0.02518180 0.3036320 -0.06238283 0.1659378 > 0.00655981 0.1169891 0.1094814 0.08773212 0.1045658 0.1279635 0.09482417 > 40 0.03756522 0.3365263 -0.02236251 0.3038959 -0.06086119 0.1717050 > 0.00918202 0.1164577 0.1115050 0.08845729 0.1073767 0.1289828 0.09655348 > 41 0.04864437 0.3478455 -0.02085046 0.3090455 -0.06093797 0.1710280 > 0.00772158 0.1086929 0.1106380 0.07467774 0.1000289 0.1289716 0.09672576 > 42 0.03498887 0.3396829 -0.02628496 0.3026424 -0.07069951 0.1745245 > 0.00900496 0.1128136 0.1133542 0.08314665 0.1060680 0.1210062 0.10292612 > 43 0.03727857 0.3421518 -0.02497760 0.3052282 -0.06231910 0.1707661 > 0.00716236 0.1125596 0.1120177 0.08327007 0.1063782 0.1267170 0.09679124 > X15 X16 X17 X18 X19 X20 > X21 X22 X23 X24 X25 X26 > 1 0.08353454 -0.05799125 -0.07175723 -0.07965200 -0.1940366 -0.1182424 > -0.4143364 -0.05806858 -0.04185348 0.03244090 -0.1530677 -0.00848853 > 2 0.09144678 -0.05306848 -0.07087960 -0.08365774 -0.1906771 -0.1174522 > -0.4070837 -0.06481417 -0.05060511 0.02269548 -0.1553392 -0.00052854 > 3 0.08774061 -0.04812070 -0.07507477 -0.07642149 -0.1940563 -0.1162903 > -0.4043927 -0.07321373 -0.05326518 0.02138662 -0.1512646 -0.00324318 > 4 0.08203180 -0.04915536 -0.07834717 -0.07240860 -0.1942712 -0.1169730 > -0.4025447 -0.07537479 -0.05407721 0.02397309 -0.1523737 0.00817375 > 5 0.07849037 -0.05793267 -0.07040117 -0.08925301 -0.1917557 -0.1250689 > -0.4103024 -0.06112350 -0.05786448 0.01784979 -0.1513137 -0.00072690 > 6 0.09606400 -0.04939519 -0.07335412 -0.07714074 -0.1859566 -0.1186813 > -0.4111922 -0.07038755 -0.05265039 0.02163882 -0.1548855 0.00373674 > 7 0.08202809 -0.05776549 -0.07023156 -0.08429409 -0.1853811 -0.1012205 > -0.4107851 -0.06024862 -0.05369279 0.02162533 -0.1618122 -0.00833126 > 8 0.08408116 -0.05546545 -0.07054873 -0.07740279 -0.1906146 -0.1134560 > -0.4094961 -0.05991786 -0.05483310 0.01587227 -0.1550806 0.00440667 > 9 0.08173533 -0.05898475 -0.06732417 -0.08327493 -0.1869380 -0.1211351 > -0.4096637 -0.05384770 -0.06024670 0.01660787 -0.1549323 0.00105192 > 10 0.08990388 -0.05096603 -0.07902367 -0.06875000 -0.1898793 -0.1263246 > -0.4041727 -0.07511031 -0.05520365 0.01665971 -0.1567334 0.01054725 > 11 0.09007625 -0.05228208 -0.06865657 -0.08141584 -0.1785119 -0.1162961 > -0.4134586 -0.06288957 -0.06146296 0.01079166 -0.1569983 -0.00517178 > 12 0.07909369 -0.05828671 -0.07630957 -0.08518630 -0.1854419 -0.1176286 > -0.4103043 -0.06245527 -0.05375068 0.01203566 -0.1435186 -0.00058781 > 13 0.08869129 -0.05615190 -0.07700241 -0.08297523 -0.1886870 -0.1197453 > -0.4087917 -0.06254112 -0.05685924 0.00769009 -0.1554166 -0.00434023 > 14 0.08281638 -0.05683797 -0.08040142 -0.08564182 -0.1874416 -0.1173324 > -0.4070371 -0.06417044 -0.06005206 0.02471076 -0.1534899 -0.00414805 > 15 0.07766990 -0.06039028 -0.07157419 -0.08131193 -0.1885616 -0.1099764 > -0.4061315 -0.06466864 -0.05888100 0.01503151 -0.1571099 0.00169560 > 16 0.08356302 -0.05290170 -0.07443548 -0.08130295 -0.1891023 -0.1147370 > -0.4036037 -0.06327631 -0.05415777 0.01522188 -0.1572772 0.00378025 > 17 0.07976615 -0.06084095 -0.06973780 -0.07981716 -0.1909071 -0.1235545 > -0.4068859 -0.05798384 -0.06159971 0.00858528 -0.1534898 -0.00420217 > 18 0.07674165 -0.05952958 -0.06726362 -0.08378561 -0.1862499 -0.1206991 > -0.4086199 -0.06408284 -0.05826639 0.01614382 -0.1589863 0.00259418 > 19 0.08321222 -0.04982932 -0.07262123 -0.07571575 -0.1842675 -0.1141550 > -0.4012353 -0.06517030 -0.05727507 0.01809275 -0.1557622 0.00712424 > 20 0.08839225 -0.05482370 -0.08021634 -0.08019008 -0.1950502 -0.1188761 > -0.4114534 -0.06554782 -0.05432096 0.01783583 -0.1561641 0.00029592 > 21 0.08565182 -0.05286974 -0.06977098 -0.08253675 -0.1852833 -0.1197607 > -0.4073264 -0.06810853 -0.05591365 0.01753291 -0.1650466 -0.00025638 > 22 0.08421212 -0.04636359 -0.07831666 -0.07982646 -0.1868517 -0.1241012 > -0.4079612 -0.07505074 -0.05434388 0.01989820 -0.1514490 -0.00093833 > 23 0.08793525 -0.05365347 -0.06472235 -0.08717425 -0.1899425 -0.1187653 > -0.4113452 -0.06715596 -0.05653634 0.00802300 -0.1518017 -0.00071178 > 24 0.08984698 -0.04977970 -0.06463173 -0.08176728 -0.1890982 -0.1266709 > -0.4109300 -0.07433760 -0.04918986 0.01749977 -0.1588073 -0.00249127 > 25 0.09310708 -0.05198461 -0.07256856 -0.08322654 -0.1847227 -0.1201354 > -0.4105467 -0.06997466 -0.04694864 0.01749848 -0.1517488 0.00022039 > 26 0.09317673 -0.04678360 -0.07259587 -0.07949791 -0.1918404 -0.1253310 > -0.4060474 -0.07074014 -0.05047586 0.01906609 -0.1543663 -0.00753919 > 27 0.08181010 -0.05951194 -0.07210549 -0.08530765 -0.1872531 -0.1267180 > -0.4001163 -0.07078782 -0.05560069 0.01858980 -0.1611446 0.00122836 > 28 0.07872919 -0.05442325 -0.06830948 -0.08843915 -0.1837785 -0.1228205 > -0.4143437 -0.06515964 -0.05244770 0.01396285 -0.1571221 -0.00182567 > 29 0.08179883 -0.05549111 -0.05971613 -0.08442819 -0.1816986 -0.1183987 > -0.4113628 -0.06524062 -0.05889282 0.01265866 -0.1529821 0.00102112 > 30 0.08634289 -0.04834977 -0.06493534 -0.07823458 -0.1789007 -0.1187182 > -0.4085388 -0.07324902 -0.05679740 0.01173469 -0.1494629 0.00254265 > 31 0.08451922 -0.05786002 -0.06534602 -0.08298379 -0.1865164 -0.1190093 > -0.4035721 -0.07389657 -0.05323282 0.02090554 -0.1548673 0.00322739 > 32 0.08192703 -0.05647825 -0.06656135 -0.08653216 -0.1848345 -0.1224778 > -0.4117063 -0.07156817 -0.06395975 0.01799044 -0.1451020 -0.00068453 > 33 0.08820165 -0.05709329 -0.06762739 -0.08470288 -0.1877153 -0.1250306 > -0.4087827 -0.07042919 -0.05808916 0.01617233 -0.1458136 0.00215618 > 34 0.08220544 -0.05190651 -0.06849618 -0.08605492 -0.1867148 -0.1230656 > -0.4096368 -0.06856346 -0.05064415 0.01399339 -0.1514706 -0.00178370 > 35 0.08999593 -0.04658011 -0.07202555 -0.07697374 -0.1842549 -0.1179091 > -0.4093135 -0.08019919 -0.05458951 0.01361942 -0.1530941 0.00141061 > 36 0.09097274 -0.05698501 -0.07291044 -0.07907794 -0.1815682 -0.1265830 > -0.4125040 -0.08242673 -0.04704164 0.01220606 -0.1455115 0.00487952 > 37 0.08423549 -0.04820838 -0.06981753 -0.07506642 -0.1832839 -0.1217569 > -0.4062251 -0.07326567 -0.06109303 0.01863291 -0.1550869 -0.00900105 > 38 0.09081034 -0.04334258 -0.07523437 -0.07356960 -0.1870120 -0.1280918 > -0.4066036 -0.07582853 -0.04585141 0.01835859 -0.1434844 -0.00514960 > 39 0.08999400 -0.05108079 -0.06913330 -0.07777063 -0.1836496 -0.1206579 > -0.4027362 -0.07246762 -0.05437498 0.01820410 -0.1582088 -0.00022957 > 40 0.08917527 -0.05025311 -0.07619560 -0.07701025 -0.1899592 -0.1293397 > -0.4062314 -0.07571202 -0.05478198 0.02348193 -0.1515705 -0.00367588 > 41 0.08724706 -0.05339396 -0.06764127 -0.08142597 -0.1920567 -0.1262740 > -0.4103992 -0.06972083 -0.05404240 0.01468963 -0.1538997 -0.00792075 > 42 0.08935826 -0.04370969 -0.07061005 -0.07390300 -0.1892261 -0.1220189 > -0.4033962 -0.08012486 -0.05367861 0.02266228 -0.1553467 0.00279954 > 43 0.08862920 -0.04573770 -0.07750446 -0.08108652 -0.1879394 -0.1229537 > -0.4009561 -0.08155373 -0.04825828 0.02180267 -0.1565422 0.00318127 > X27 X28 X29 X30 > 1 -0.2868711 0.00050519 -0.4384229 0.05016284 > 2 -0.2901578 0.00511753 -0.4411721 0.05167690 > 3 -0.2978525 0.00237756 -0.4358859 0.05962194 > 4 -0.2917145 0.00684378 -0.4423562 0.04526489 > 5 -0.2885244 0.00204270 -0.4263903 0.05661372 > 6 -0.2900707 0.00635219 -0.4396794 0.05711066 > 7 -0.2962547 -0.00358157 -0.4214827 0.05091520 > 8 -0.2901226 0.00745676 -0.4395734 0.04604420 > 9 -0.2940762 0.01063867 -0.4280484 0.04999674 > 10 -0.2927935 0.00479719 -0.4355966 0.05820974 > 11 -0.2942218 0.00314880 -0.4338297 0.06560538 > 12 -0.2913574 0.00455942 -0.4372106 0.05996290 > 13 -0.2974658 -0.00009952 -0.4233009 0.07110756 > 14 -0.2923199 0.00633662 -0.4240588 0.05109118 > 15 -0.2938818 0.00719793 -0.4289276 0.05569097 > 16 -0.2908617 0.01014224 -0.4389784 0.04743121 > 17 -0.2893472 0.01107256 -0.4245969 0.05387120 > 18 -0.2940062 0.00422916 -0.4259776 0.05501802 > 19 -0.2942439 0.00304953 -0.4418344 0.04660654 > 20 -0.2882717 0.00433029 -0.4282643 0.05905793 > 21 -0.2903390 0.00034231 -0.4254657 0.02799100 > 22 -0.2864387 -0.00393233 -0.4361462 0.03607284 > 23 -0.2919381 -0.00444150 -0.4317725 0.03885246 > 24 -0.2984952 -0.00454442 -0.4242630 0.04057545 > 25 -0.2918384 0.00183427 -0.4419155 0.03077541 > 26 -0.2956216 -0.00493682 -0.4335607 0.03509510 > 27 -0.2912214 -0.00020187 -0.4291167 0.03956703 > 28 -0.2886656 -0.00820143 -0.4275434 0.04083941 > 29 -0.2897315 -0.00181307 -0.4332215 0.02885430 > 30 -0.2881433 -0.00330450 -0.4416871 0.03167367 > 31 -0.2911387 0.00329254 -0.4384030 0.02551492 > 32 -0.2930178 -0.00757535 -0.4268382 0.03647625 > 33 -0.2906006 -0.00547907 -0.4337808 0.03663254 > 34 -0.2894727 0.00027348 -0.4324036 0.03879201 > 35 -0.2900338 -0.00101017 -0.4352513 0.02773395 > 36 -0.2911340 0.00317057 -0.4371728 0.03853357 > 37 -0.2887806 -0.00350296 -0.4380146 0.04047513 > 38 -0.2940667 -0.00058660 -0.4469157 0.03693919 > 39 -0.2958324 -0.00273129 -0.4413747 0.03341547 > 40 -0.2903865 -0.00050731 -0.4378892 0.03405760 > 41 -0.2987432 -0.00461726 -0.4219447 0.04669297 > 42 -0.2999966 -0.00759683 -0.4294421 0.03253387 > 43 -0.2948869 -0.00501487 -0.4362682 0.03903118 > > -- > MORPHMET may be accessed via its webpage at http://www.morphometrics.org > > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected] > <javascript:_e(%7B%7D,'cvml','morphmet%[email protected]');> > . > -- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Emma Sherratt, PhD. Lecturer in Zoology, Zoology Division, School of Environmental and Rural Science, Room L118 Bldg C02, University of New England, Armidale, NSW, Australia, 2351 Tel: +61 2 6773 5038 email: [email protected] Caecilians are legless amphibians... * __ (\ .-. .-. /_") \\_//^\\_//^\\_// `"` `"` `"`* learn more about them here: www.emmasherratt.com/caecilians -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].
