Lawrence, Though you mentioned that you checked them, what you described frequently occurs when names are not the same in the data matrix and phylogeny. Since you did not specify how they were checked, I would use the ‘match’ function. If any NAs appear, you have a name mismatch.
If that is not it, I would need some more information from you to help diagnose the problem. Dean Dr. Dean C. Adams Director of Graduate Education, EEB Program Professor Department of Ecology, Evolution, and Organismal Biology Iowa State University www.public.iastate.edu/~dcadams/<http://www.public.iastate.edu/~dcadams/> phone: 515-294-3834 From: Lawrence Fatica <lawrence.m.fat...@gmail.com> Sent: Friday, May 25, 2018 8:36 PM To: MORPHMET <morphmet@morphometrics.org> Subject: [MORPHMET] procD.pgls Hi all, I'm trying to perform a multivariate phylogenetic generalized least squares on PC scores in geomorph, and I keep getting the same error message: Error in Cov[id, id] : subscript out of bounds I get the same error whether I use procD.pgls or procD.lm with a VCV matrix from vcv.phylo. I've double checked the numbers--my tree and matrices all have the same number of taxa and matching names--and made sure I'm using the current versions of morpho and R. Has anyone else encountered this problem or have any ideas what I might be doing wrong? Many thanks, Lawrence -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org<mailto:morphmet+unsubscr...@morphometrics.org>. -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org.
