I've managed to get step 3 of the training process to run under Cygwin for the
English/French language pair. Here is how I did it. In a nutshell, manually:

#mkdir /dev
#touch /dev/stdin
#mkdir -p model
#/path/to/scripts/scripts-(date)/training/symal/giza2bal.pl -d "zcat
./giza.en-fr/en-fr.A3.final.gz" -i "zcat ./giza.fr-en/fr-en.A3.final.gz" > tmp
#/path/to/scripts/scripts-(date)/training/symal/symal -a=g -d=yes -f=yes -b=no
-i=tmp -o=./model/aligned.grow-diag-final
#rm tmp

Obviously, getting this far required a lot of bug hunting, reading scripts and
generally trying to understand where the process was failing and what it really
should be doing. The kind of thing the average user isn't really willing to
do.

I'm trying to get a patch together to fix this. Here is as far as I've managed
to get on my own. The symal.exe under cygwin doesn't like the fact that there
is no /dev/stdin file under cygwin. So I made it by hand to see if things
work.

Then it doesn't like the way, in the training script, output from giza2bal.pl is
piped to symal.exe and that output is redirected to filesystem via the >
operator.

Reproducing such a system by hand results in an empty aligned.grow-diag-final
file. So I got around this by using the -i and -o flags of the symal command
and by outputting giza2bal.pl output to a temporary file which is fed to
symal.exe via the -i flag. The -o flag I used to get output to go to the
correct file location.

I'm trying to reproduce this in the training script (in the word_align function)
so that a default install of moses will run stage 3 without having to take such
steps. The problem is that, for reasons I can't quite figure out, the system()
call, via the safesystem() function, is exiting with error code 127 after sh
outputs an error of the form:

sh: /path/to/scripts/scripts-(date)/training/symal/giza2bal.pl: No such file or
directory

This is of course complete nonsense because the files do exist and in the exact
locations indicated by the sh error messages.

If anybody has any idea how this could be happening, it would be very helpful
information in fixing this bug.
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