The decoder flags for word alignments have been cleaned up a little. They
were overlapping or didn't work.
These are the ones that work:
-print-alignment-info-in-n-best [true/false]
-alignment-output-file [filename]
The following were deleted:
-use-alignment-info
Can be inferred if either of the above switches are used
-print-alignment-info
Didn't do anything
The switch
-include-alignment-in-n-best [true/false]
was renamed
-include-*segmentation*-in-n-best [true/false]
to better reflect what it actually does
Sorry if it breaks anyone's code
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