At first, I am sorry for my not-carefully-thinking answer, when somebody asked months ago. When I compile mpb for CDLinux as a module, I meet the problem. I carefully read the "configure", still can't find any clues. So I turn to Google for help. After explore 10 pages of the search results, finally I find the answer. Where the answer is "http://cc.ee.ntu.edu.tw/~ypchiou/Photonic_Crystals/MPB_Intro.pdf"; which is writen in traditional Chinese. The solution is that Do Not Use fftw3, Use fftw2 instead。 ----- see this link http://docs.google.com/Doc?docid=0Adm7UBu940N1ZGRmc2Q1O
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