|
Hi all, Sorry as this is not totally a MPIBLAST question, but I hope
someone can point me in the right direction. I’m running
MPIBLAST-1.4.0 on AMD Opteron systems using ROCKS 4.0.0 cluster. I
recently noticed that while running MPIBLAST w/ Sun Grid Engine, when I delete
the job in SGE, my MPIBLAST processes stay on the compute nodes. I
followed the tight integration instructions here: http://gridengine.sunsource.net/howto/mpich-integration.html
(by choosing to set the environment variable MPICH_PROCESS_GROUP=no) Upon closer inspection of the stopmpi.sh script that SGE uses for its
parallel jobs, all the script does is delete the machine file SGE creates for
MPI. It does not even mention anything about killing processes created
(i.e MPIBLAST in this case). If anyone has gotten tight integration
working with MPIBLAST, can you point me in the right direction of how/if I have
to edit that stopmpi.sh script, or do something different? Thank you in advance, Ray Univ of CA Davis |
- [Mpiblast-users] MPIBLAST processes staying on compute nodes ... Raymond Chan
