it looks like there's a problem in automake's dependency tracking on
your system.
try a `make clean` then make
or try applying the edits to a clean copy of mpiblast that hasn't been
configured or compiled yet.
-aaron
Hansen, Raymond A wrote:
All,
I am trying to recompile mpiblast after I made a minor change to the
blast_hooks.c file. The edit was to simply add a timestamp as the
very first line of output in the mpiBlastPrintReference() function for
the output file being specified by the -o parameter at runtime. I
have already run the configure script with the following parameters as:
[EMAIL PROTECTED] mpiblast-1.40]#./configure
--with-ncbi=/home/mpiblast/ncbi --prefix=/home/mpiblast
I added 4 lines of code and 2 lines of comments to blast_hooks.c and
then saved it. It then attempted to recompile and get the following:
[EMAIL PROTECTED] mpiblast-1.40]#make
Making all in src
make[1]: Entering directory `/home/mpiblast/mpiblast-1.4.0/src'
make all-am
make[2]: Entering directory `/home/mpiblast/mpiblast-1.4.0/src'
if mpicc -DHAVE_CONFIG_H -I. -I. -I. -I../include/
-I/home/mpiblast/ncbi/include/ -DUSING_MPI
-DINSTALL_PREFIX="\"/home/mpiblast\"" -g -O2 -MT
mpiblast-blast_hooks.o -MD -MP -MF ".deps/mpiblast-blast_hooks.Tpo" -c
-o mpiblast-blast_hooks.o `test -f 'blast_hooks.c' || echo
'./'`blast_hooks.c; \
then mv -f ".deps/mpiblast-blast_hooks.Tpo"
".deps/mpiblast-blast_hooks.Po"; else rm -f
".deps/mpiblast-blast_hooks.Tpo"; exit 1; fi
cc1: you must additionally specify either -M or -MM
make[2]: *** [mpiblast-blast_hooks.o] Error 1
make[2]: Leaving directory `/home/mpiblast/mpiblast-1.4.0/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/mpiblast/mpiblast-1.4.0/src'
make: *** [all-recursive] Error 1
After having spent an hour or so testing various things, it appears
that any edit to the blast_hooks.c file will throw this error. Is
there any way around this? I would like to be able to identify how
much time is being spend writing the output file vs the overall time
for execution and I figured that simply adding a line of output
stating the time would be the simplest way.
Any help would be appreciated. I thank you in advance for your
assistance.
Ray
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