I use -b and -v successfully with mpiblast. Are you perhaps counting the number of HSPs instead of the number of hits?
----- Original Message ----
From: Gabri Aparicio <[EMAIL PROTECTED]>
To: [email protected]
Sent: Tuesday, May 30, 2006 10:43:54 AM
Subject: [Mpiblast-users] NUMBER OF OUTPUT HITS DOES NOT MATCH WITH THE INPUT PARAMETERS
Hi,
I want to obtain only a certain number of hits in the output XML. In the sequential BLASTALL I can solve it by using the -v and -b parameters, but the same line in MPIBLAST does not work properly.
I just want to obtain 20 blast hits and MPIBLAST always give me 274 blast hits. It seems MPIBLAST does not analize -v and -b parameters.
Do you have any idea of how to solve my problem?
Thanks.
----- Original Message ----
From: Gabri Aparicio <[EMAIL PROTECTED]>
To: [email protected]
Sent: Tuesday, May 30, 2006 10:43:54 AM
Subject: [Mpiblast-users] NUMBER OF OUTPUT HITS DOES NOT MATCH WITH THE INPUT PARAMETERS
Hi,
I want to obtain only a certain number of hits in the output XML. In the sequential BLASTALL I can solve it by using the -v and -b parameters, but the same line in MPIBLAST does not work properly.
I just want to obtain 20 blast hits and MPIBLAST always give me 274 blast hits. It seems MPIBLAST does not analize -v and -b parameters.
Do you have any idea of how to solve my problem?
Thanks.
