I've updated mpiblast, to provide a new patch which works with the latest (May 2006) version of the ncbi toolbox. Mainly this just fixes some warnings about line numbers when the Dec 2005 patch is used against the May 2006. However it also includes a bug-fix/performance-enhancement when using the -l switch. See
http://comments.gmane.org/gmane.comp.clustering.mpiblast.user/2for the previous discussion of this change.
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