Hi for all,
Please, I have one problem when try execute mpiBlast.
I configured the file .ncbirc, like this:
[NCBI]
Data="">
[BLAST]
BLASTDB=/home/server/b0220445/DB_mpiBlast
BLASTMAT=/home/local/b0220445/ncbi/data
[mpiBLAST]
Shared=/home/server/b0220445/DB_mpiBlast
Local=/home/local/b0220445/mpiblast-1.4.0/storageLocal
I put my databases in /home/server/b0220445/DB_mpiBlast
But de mpiBLAST show me this out:
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.000
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.001
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.002
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.003
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/server/b0220445/DB_mpiBlast/ecoli.aa
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.000
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.001
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.002
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.003
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/server/b0220445/DB_mpiBlast/ecoli.aa
[blastall] FATAL ERROR: NCU10034.1: Database /home/server/b0220445/DB_mpiBlast/ecoli.aa was not found or does not exist
MPI_Recv: process in local group is dead (rank 1, comm 3)
MPI_Recv: process in local group is dead (rank 2, comm 3)
I don't know why it show this address :/home/local/b0220445/DB_mpiBlast/ecoli.aa.003, as local storage.
Why it isn't working?
OBS: I have confirmed if directories there are.
Thanks
Daniel
Please, I have one problem when try execute mpiBlast.
I configured the file .ncbirc, like this:
[NCBI]
Data="">
[BLAST]
BLASTDB=/home/server/b0220445/DB_mpiBlast
BLASTMAT=/home/local/b0220445/ncbi/data
[mpiBLAST]
Shared=/home/server/b0220445/DB_mpiBlast
Local=/home/local/b0220445/mpiblast-1.4.0/storageLocal
I put my databases in /home/server/b0220445/DB_mpiBlast
But de mpiBLAST show me this out:
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.000
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.001
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.002
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.003
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/server/b0220445/DB_mpiBlast/ecoli.aa
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.000
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.001
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.002
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/local/b0220445/DB_mpiBlast/ecoli.aa.003
[blastall] WARNING: NCU10034.1: Could not find index files for database /home/server/b0220445/DB_mpiBlast/ecoli.aa
[blastall] FATAL ERROR: NCU10034.1: Database /home/server/b0220445/DB_mpiBlast/ecoli.aa was not found or does not exist
MPI_Recv: process in local group is dead (rank 1, comm 3)
MPI_Recv: process in local group is dead (rank 2, comm 3)
I don't know why it show this address :/home/local/b0220445/DB_mpiBlast/ecoli.aa.003, as local storage.
Why it isn't working?
OBS: I have confirmed if directories there are.
Thanks
Daniel
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