Hi Heshan,
Thanks for your help.
Daniel
----- Mensagem original ----
De: Heshan Lin <[EMAIL PROTECTED]>
Para: [email protected]
Enviadas: Terça-feira, 5 de Dezembro de 2006 14:38:42
Assunto: Re: [Mpiblast-users] One doubt...
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Hi Daniel,
pioBLAST does not change the core of NCBI BLAST
algorithm. It uses the same code for sequence comparison as mpiBLAST does. With
regarding to the performance, pioBLAST optimizes the input of sequence data
with parallel reading and explicit memory caching, as well as enables
concurrent output with parallel I/O through MPI-IO library. You can refer to
the original pioBLAST paper for more information:
http://mpiblast.lanl.gov/downloads/pubs/IPDPS05-pioBLAST.pdf
Thanks,
Heshan
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Daniel Xavier de Sousa
Sent: Tuesday, December 05, 2006
8:00 AM
To: mpiBlast
Subject: [Mpiblast-users] One
doubt...
Hi,
Can tell me anyone, if pioBLAST (of Efficient Data Access for Parallel BLAST)
change the source code of BLAST?
Thanks
Daniel
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