Hello. I 'm trying to install mpiblast 1.4.0 in supercomputer MareNostrum (powerPC64 with Suse Linux). So, as stated in the installation instructions, I downloaded the NCBI package of october'2004 in ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/20041020/ncbi.tar.gz
I patched it with the ncbi_Oct2004_evalue.patch and everything worked ok. Then I built the NCBI package without problems, in the directory /gpfs/projects/bsc05/programs/ncbi Then, I did the configure of mpiblast with this command: ./configure --with-ncbi=/gpfs/projects/bsc05/programs/ncbi and executed "make". Everything seems to be compiling OK, until I obtaing this error: mpicxx -DINSTALL_PREFIX="\"/usr/local\"" -g -o mpiblast mpiblast-blastjob.o mpiblast-db_spec.o mpiblast-blast_hooks.o mpiblast-file_util.o mpiblast-fragment_list.o mpiblast-mpiblast_util.o mpiblast-mpiblast.o mpiblast-mpiblast_config.o mpiblast-distributed_bioseq.o mpiblast-mpi_util.o /gpfs/projects/bsc05/programs/ncbi/build/ncbithr.o -lncbitool -lncbiobj -lncbi -L/gpfs/projects/bsc05/programs/ncbi/lib/ -lm -lpthread /usr/bin/ld: skipping incompatible /gpfs/projects/bsc05/programs/ncbi/lib//libncbitool.a when searching for -lncbitool /usr/bin/ld: cannot find -lncbitool make[2]: *** [mpiblast] Error 1 make[2]: Leaving directory `/gpfs/projects/bsc05/programs/mpiblast-1.4.0/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/gpfs/projects/bsc05/programs/mpiblast-1.4.0/src' make: *** [all-recursive] Error 1 I don't understand why /gpfs/projects/bsc05/programs/ncbi/lib//libncbitool.a is incompatible, since I followed the installation instructions and used the proper versions and patches. Could you help me? thank you. -- David García Cortés Supercomputing research, support and development. Computational Node INB-BSC. Instituto Nacional de Bioinformática (I.N.B. - www.inab.org) Barcelona Supercomputing Center - Centro Nacional de Supercomputación (B.S.C. - www.bsc.es) c/ Jordi Girona, 29. Nexus II Building, Life Sciences Department Tel: (+34) 93 413 40 49 E-08034 Barcelona e-mail: [EMAIL PROTECTED] Catalunya (Spain) ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Mpiblast-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mpiblast-users
