Hi,
I have a problem with MPIFORMATDB.
I have put this command: ./mpiformatdb -N 24 -i nt -p F
And the program returned this out:
///////////////////////////////////////////////////////////////////////////////
OUT OF MPIBLAST
nt: Value too large for defined data type
Reading input file
0%Done, read 263843064 lines
Temp name base: /tmp/reorderXXXXXX
Got temp name: /tmp/reorderb0538C
Reordering 5214551 sequence entries
2.58%
...
[formatdb] WARNING: Sequence number 5051632 (gi|4704323|dbj|AB013452.1|), 15
illegal characters were removed:
2 Es, 1 F, 4 Is, 3 Ls, 3 Os, 2 Ps
[formatdb] WARNING: Sequence number 5052135 (gi|640099|pdb|172D|D), 32 illegal
characters were removed:
4 Es, 3 Fs, 9 Is, 3 Ls, 7 Os, 3 Ps, 3 -s
[formatdb] WARNING: Sequence number 5052365 (gi|999772), 31 illegal characters
were removed:
5 Es, 1 F, 9 Is, 6 Ls, 5 Os, 5 Ps
[formatdb] ERROR: Failed to create index. Possibly a gi included more than
once in the database.
Removed /tmp/reorder9UjHhX
There was an error executing formatdb. Check formatdb.log
///////////////////////////////////////////////////////////////////////////////
To test I broke the nt file in 24 parts and executed each one and I did'nt find
nothing of error.This error is happening because de size of NT to be 20 GB?
What I have to do for resolve this error?
Thanks
Daniel Sousa
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* Daniel Xavier de Sousa *
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