Hi for all,
I have run the mpiblast with 8 workstations with same line command:
mpirun -np 10 mpiblast -p blastn -d nt -i net_1000_nucl.seq -o
out_mpiblast_net_1000_nucl_nt2.seq
The first time with 25 fragments and another time with 96 fragments.
With 25 fragments the mpiblast have get 138360 seconds. With 96 fragments the
mpiblast have get 129060 seconds.
I have run without a shared filesystem.
My question is: It is normal this difference of time with 25 and 96
fragments?
I was hopping faster with 96 fragments than 25 fragments.
Thanks
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* Daniel Xavier de Sousa *
* Mestrando em Informática - PUC-Rio *
* E-MAIL : dsousaARROBAinf.puc-rio.br *
* Fone : +55 21 35271500 - 4543 *
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