I'm probably missing something important here, but why set LD_LIBRARY_PATH to the sage environment for either Configure or make, when building Pari?
The correct way to tell Pari which readline and gmp to link against is --with-gmp=.... and --with-readline=..... LD_LIBRARY_PATH should only be changed at runtime. Of course make check probably both compiles the test suite and executes it, which requires LD_LIBRARY_PATH set two different ways at the same time. There is also a potential issue with Cython (I didn't check how Cython calls the compiler). It wants to run the C compiler at Sage runtime. That's also potentially messed up if someone writes some cython code which does constant folding. Really and truly, the gcc should not be dynamically linked against gmp, but statically linked. Under normal circumstances it is not a problem because the user simply adds the Sage local libs directory to LD_LIBRARY_PATH, leaving the system library path in there. Here we don't want to do that because we are providing our own version of "GMP". Basically there is no right way of dealing with an issue like this. If you fork a library that gcc uses then dynamically link gcc against that library, it's broken. Bill. 2009/11/15 Jason Moxham <[email protected]>: > > On Sunday 15 November 2009 02:24:47 William Stein wrote: >> On Sat, Nov 14, 2009 at 6:17 PM, Jason Moxham <[email protected]> > wrote: >> > Of course , that is the error >> > LD_LIBRARY_PATH sets the path for executables so there is no need for it >> > to be set when building pari (just when running it) so the only thing >> > that is USING libgmp is gcc which doesn't like it . >> >> This means that a temporary workaround is that in the spkg-install >> script for PARI we put: >> >> echo "Building and install PARI" >> TMP=LD_LIBRARY_PATH; unset LD_LIBRARY_PATH >> if [ "$UNAME" = "CYGWIN" ]; then >> # There are weird bugs in PARI's build process on Windows XP >> # under Cygwin. >> # Passing in this extra flag gets around the bug. >> $MAKE GMPINCLUDE=-I$SAGE_LOCAL/include EXTRADLLDFLAGS=-lgmp gp >> else >> $MAKE gp >> fi >> LD_LIBRARY_PATH=$TMP >> >> > > I think pari wont use readline if we do this , but I dont think sage uses pari > like that ? so it should be OK > >> Of course, I'm curious why a FAT mpir crashes GCC... > > Yeah , weird , just seems to be debian 4.3.2 that does it , NOTE: gcc-4.3.2 > also buggers up some other packages eg gmp-4.3.x , so it may not be worth the > effort trying to fix it. > > >> I can't work on this now, unfortunately, since the latency of my net >> connection at this hotel is horrendous. >> >> William >> >> > On Sunday 15 November 2009 02:06:25 Jason Moxham wrote: >> >> this is with mpir-1.2 ,and I think we have only start to remove them in >> >> 1.3 >> >> >> >> I mean pari builds fine with our fat enabled mpir , but only if >> >> LD_LIBRARY_PATH does NOT point to our libmpir >> >> >> >> LD_LIBRARY_PATH is not used until linking time ? so it should have no >> >> effect on the compile . >> >> If gcc is using our libmpir internally , which it should not , then gcc >> >> may require libgmp to built with certain options , some sort of specific >> >> malloc etc >> >> >> >> On Sunday 15 November 2009 01:50:52 Bill Hart wrote: >> >> > Heh! I don't suppose gcc would be using old deprecated functions which >> >> > we've removed. :-) >> >> > >> >> > Bill. >> >> > >> >> > 2009/11/15 Bill Hart <[email protected]>: >> >> > > That seems like a likely possibility, in which case one presumes >> >> > > there is a symbol which GMP provides and we don't, or at least our >> >> > > interface is different. >> >> > > >> >> > > I think gcc only uses GMP for constant folding though, and the line >> >> > > in question didn't involve any constants did it? >> >> > > >> >> > > I wonder how one even debugs something like this. I suppose you >> >> > > could valgrind gcc while compiling that one file? >> >> > > >> >> > > Bill. >> >> > > >> >> > > 2009/11/15 Jason Moxham <[email protected]>: >> >> > >> export >> >> > >> LD_LIBRARY_PATH=/tmp/jason/sage-4.2.1/local/lib/R/lib:/tmp/jason/sa >> >> > >>ge- 4. 2.1/local/lib/openmpi:/tmp/jason/sage-4.2.1/local/lib/: >> >> > >> >> >> > >> like the sage shell does and then we get the same error >> >> > >> >> >> > >> So I deleted all files in .../local/lib/ except libgmp* >> >> > >> and exported >> >> > >> LD_LIBRARY_PATH=/tmp/jason/sage-4.2.1/local/lib/: >> >> > >> >> >> > >> and we get the error >> >> > >> whereas without the export pari builds fine >> >> > >> >> >> > >> Could the gcc on debian32 be using the gmp in our local path to do >> >> > >> its internal optimizations , whereas gcc should use the system gmp >> >> > >> >> >> > >> On Sunday 15 November 2009 00:24:25 Jason Moxham wrote: >> >> > >>> It appears to be the actual environment that sage provides in its >> >> > >>> "sage subshell" >> >> > >>> >> >> > >>> >> >> > >>> ie >> >> > >>> >> >> > >>> Building pari in the sage shell >> >> > >>> >> >> > >>> sage subshell$ ./Configure --graphic=none >> >> > >>> --prefix=/tmp/jason/sage-4.2.1/local >> >> > >>> --with-readline=/tmp/jason/sage-4.2.1/local --with- >> >> > >>> gmp=/tmp/jason/sage-4.2.1/local --kernel=gmp --graphic=none && >> >> > >>> make gp Configuring pari-2.3.3 (STABLE) >> >> > >>> Checking echo to see how to suppress newlines... >> >> > >>> ...using -n. >> >> > >>> Looking for some tools first ... >> >> > >>> ...ld is /usr/bin/ld >> >> > >>> ...zcat is /bin/zcat >> >> > >>> ...gzip is /bin/gzip >> >> > >>> ...ranlib is /usr/bin/ranlib >> >> > >>> ...perl is /usr/bin/perl >> >> > >>> ...emacs is /usr/bin/emacs >> >> > >>> GNU compiler version 4.3.2 (Debian 4.3.2-1.1) >> >> > >>> Given the previous choices, sizeof(long) is 4 chars. >> >> > >>> The internal word representation of a double is l[1], l[0]. >> >> > >>> ================================================================== >> >> > >>>=== == === Building for architecture: i686 running linux (ix86/GMP >> >> > >>> kernel) 32-bit version >> >> > >>> ================================================================== >> >> > >>>=== == === C compiler is gcc -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer Executable linker is >> >> > >>> ld --export-dynamic Dynamic Lib linker is gcc -shared >> >> > >>> $(CFLAGS) $(DLCFLAGS) -Wl,-shared,- soname=$(LIBPARI_SONAME) >> >> > >>> Looking in C lib for some symbols... >> >> > >>> ...I did not find exp2. >> >> > >>> ...I did not find log2. >> >> > >>> ...Found strftime. >> >> > >>> ...Found getrusage. >> >> > >>> ...Found sigaction. >> >> > >>> ...Found TIOCGWINSZ. >> >> > >>> ...Found getrlimit. >> >> > >>> ...Found stat. >> >> > >>> ...Found vsnprintf. >> >> > >>> ...I did not find dlopen. >> >> > >>> Try again, with -ldl this time... >> >> > >>> ...Found dlopen. >> >> > >>> Checking for optional libraries and headers... >> >> > >>> ...Found libgmp in /tmp/jason/sage-4.2.1/local/lib >> >> > >>> ...Found gmp header in /tmp/jason/sage-4.2.1/local/include >> >> > >>> Using GNU MP, version 4.2.1 >> >> > >>> ### >> >> > >>> ### libX11.so not found. Please install X11 development files. >> >> > >>> ### They usually come in XFree86-devel (RPM) or xlibs-dev (Debian) >> >> > >>> packages ### >> >> > >>> ### X11 not found >> >> > >>> ### FLTK not found. Building without FLTK support >> >> > >>> Hi-Res Graphics: none >> >> > >>> ...Found libreadline in /tmp/jason/sage-4.2.1/local/lib >> >> > >>> ...Found readline header in >> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ...Found history >> >> > >>> header in /tmp/jason/sage-4.2.1/local/include/readline ### >> >> > >>> ### libncurses.so not found. Please install ncurses development >> >> > >>> files. ### They usually come in ncurses-devel (RPM) or >> >> > >>> libncurses-dev (Debian) packages >> >> > >>> ### >> >> > >>> ...Found libtermcap in /tmp/jason/sage-4.2.1/local/lib/ >> >> > >>> ...Library termcap needed by readline >> >> > >>> Using GNU readline, version 6.0 >> >> > >>> Installation prefix ? [/tmp/jason/sage-4.2.1/local] >> >> > >>> ...for architecture-independent files (share-prefix) ? >> >> > >>> [/tmp/jason/sage-4.2.1/local/share] >> >> > >>> Installation directories for: >> >> > >>> ...executables (gp, gphelp) ? [/tmp/jason/sage-4.2.1/local/bin] >> >> > >>> ...libraries (libpari) ? [/tmp/jason/sage-4.2.1/local/lib] >> >> > >>> ...include files ? [/tmp/jason/sage-4.2.1/local/include] >> >> > >>> ...manual pages ? [/tmp/jason/sage-4.2.1/local/share/man/man1] >> >> > >>> ...emacs macros ? >> >> > >>> [/tmp/jason/sage-4.2.1/local/share/emacs/site-lisp/pari] ...other >> >> > >>> system-dependant data ? [/tmp/jason/sage-4.2.1/local/lib/pari] >> >> > >>> ...other system-independant data ? >> >> > >>> [/tmp/jason/sage-4.2.1/local/share/pari] Default is dynamic >> >> > >>> executable and shared library >> >> > >>> ================================================================== >> >> > >>>=== == === Extracting examples/Makefile.linux-i686 >> >> > >>> Extracting Olinux-i686/Makefile >> >> > >>> Extracting Olinux-i686/../Odos/paricfg.h >> >> > >>> ./config/paricfgDOS.h.SH: line 3: Olinux-i686/../Odos/paricfg.h: >> >> > >>> No such file or directory >> >> > >>> Extracting Olinux-i686/paricfg.h >> >> > >>> Extracting Makefile >> >> > >>> Extracting scripts and macros >> >> > >>> ...in doc >> >> > >>> ...in emacs >> >> > >>> ...in misc >> >> > >>> ================================================================== >> >> > >>>=== == === Shall we try to build pari 2.3.3 (released) now (y/n)? >> >> > >>> [n] Ok. Type "make install" when you are ready >> >> > >>> Bye ! >> >> > >>> Making gp in Olinux-i686 >> >> > >>> make[1]: Entering directory >> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >> >> > >>> File ../src/funclist not changed. >> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >> >> > >>> - I../src/headers -I../src/language >> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o gp.o ../src/gp/gp.c >> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >> >> > >>> - I../src/headers -I../src/language >> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o gp_rl.o ../src/gp/gp_rl.c >> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >> >> > >>> - I../src/headers -I../src/graph -o plotport.o >> >> > >>> ../src/graph/plotport.c ../src/graph/plotport.c: In function >> >> > >>> ârectticksâ: >> >> > >>> ../src/graph/plotport.c:469: internal compiler error: Segmentation >> >> > >>> fault Please submit a full bug report, >> >> > >>> with preprocessed source if appropriate. >> >> > >>> See <file:///usr/share/doc/gcc-4.3/README.Bugs> for instructions. >> >> > >>> make[1]: *** [plotport.o] Error 1 >> >> > >>> make[1]: Leaving directory >> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >> >> > >>> make: *** [gp] Error 2 >> >> > >>> /tmp/jason/sage-4.2.1 >> >> > >>> sage subshell$ >> >> > >>> >> >> > >>> >> >> > >>> >> >> > >>> And build it in a normal shell >> >> > >>> >> >> > >>> >> >> > >>> jasonmox...@debian5-32:/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3 >> >> > >>>.p5 /s rc$ ./Configure --graphic=none >> >> > >>> --prefix=/tmp/jason/sage-4.2.1/local --with- >> >> > >>> readline=/tmp/jason/sage-4.2.1/local >> >> > >>> --with-gmp=/tmp/jason/sage-4.2.1/local -- kernel=gmp >> >> > >>> --graphic=none && make gp >> >> > >>> Configuring pari-2.3.3 (STABLE) >> >> > >>> Checking echo to see how to suppress newlines... >> >> > >>> ...using -n. >> >> > >>> Looking for some tools first ... >> >> > >>> ...ld is /usr/bin/ld >> >> > >>> ...zcat is /bin/zcat >> >> > >>> ...gzip is /bin/gzip >> >> > >>> ...ranlib is /usr/bin/ranlib >> >> > >>> ...perl is /usr/bin/perl >> >> > >>> ...emacs is /usr/bin/emacs >> >> > >>> Looking for the compilers ... >> >> > >>> ...cc is /usr/bin/cc >> >> > >>> ...gcc is /usr/bin/gcc >> >> > >>> GNU compiler version 4.3.2 (Debian 4.3.2-1.1) >> >> > >>> Given the previous choices, sizeof(long) is 4 chars. >> >> > >>> The internal word representation of a double is l[1], l[0]. >> >> > >>> ================================================================== >> >> > >>>=== == === Building for architecture: i686 running linux (ix86/GMP >> >> > >>> kernel) 32-bit version >> >> > >>> ================================================================== >> >> > >>>=== == === C compiler is /usr/bin/gcc -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit- frame-pointer >> >> > >>> Executable linker is /usr/bin/gcc -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit- frame-pointer -Wl,--export-dynamic >> >> > >>> Dynamic Lib linker is /usr/bin/gcc -shared $(CFLAGS) >> >> > >>> $(DLCFLAGS) -Wl,- shared,-soname=$(LIBPARI_SONAME) >> >> > >>> Looking in C lib for some symbols... >> >> > >>> ...I did not find exp2. >> >> > >>> ...I did not find log2. >> >> > >>> ...Found strftime. >> >> > >>> ...Found getrusage. >> >> > >>> ...Found sigaction. >> >> > >>> ...Found TIOCGWINSZ. >> >> > >>> ...Found getrlimit. >> >> > >>> ...Found stat. >> >> > >>> ...Found vsnprintf. >> >> > >>> ...I did not find dlopen. >> >> > >>> Try again, with -ldl this time... >> >> > >>> ...Found dlopen. >> >> > >>> Checking for optional libraries and headers... >> >> > >>> ...Found libgmp in /tmp/jason/sage-4.2.1/local/lib >> >> > >>> ...Found gmp header in /tmp/jason/sage-4.2.1/local/include >> >> > >>> Using GNU MP, version 4.2.1 >> >> > >>> ### >> >> > >>> ### libX11.so not found. Please install X11 development files. >> >> > >>> ### They usually come in XFree86-devel (RPM) or xlibs-dev (Debian) >> >> > >>> packages ### >> >> > >>> ### X11 not found >> >> > >>> ### FLTK not found. Building without FLTK support >> >> > >>> Hi-Res Graphics: none >> >> > >>> ...Found libreadline in /tmp/jason/sage-4.2.1/local/lib >> >> > >>> ...Found readline header in >> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ...Found history >> >> > >>> header in /tmp/jason/sage-4.2.1/local/include/readline ### >> >> > >>> ### libncurses.so not found. Please install ncurses development >> >> > >>> files. ### They usually come in ncurses-devel (RPM) or >> >> > >>> libncurses-dev (Debian) packages >> >> > >>> ### >> >> > >>> ### >> >> > >>> ### Readline library detected, but does not seem to work >> >> > >>> ### >> >> > >>> ### Building without GNU readline support >> >> > >>> Installation prefix ? [/tmp/jason/sage-4.2.1/local] >> >> > >>> ...for architecture-independent files (share-prefix) ? >> >> > >>> [/tmp/jason/sage-4.2.1/local/share] >> >> > >>> Installation directories for: >> >> > >>> ...executables (gp, gphelp) ? [/tmp/jason/sage-4.2.1/local/bin] >> >> > >>> ...libraries (libpari) ? [/tmp/jason/sage-4.2.1/local/lib] >> >> > >>> ...include files ? [/tmp/jason/sage-4.2.1/local/include] >> >> > >>> ...manual pages ? [/tmp/jason/sage-4.2.1/local/share/man/man1] >> >> > >>> ...emacs macros ? >> >> > >>> [/tmp/jason/sage-4.2.1/local/share/emacs/site-lisp/pari] ...other >> >> > >>> system-dependant data ? [/tmp/jason/sage-4.2.1/local/lib/pari] >> >> > >>> ...other system-independant data ? >> >> > >>> [/tmp/jason/sage-4.2.1/local/share/pari] Default is dynamic >> >> > >>> executable and shared library >> >> > >>> ================================================================== >> >> > >>>=== == === Extracting examples/Makefile.linux-i686 >> >> > >>> Extracting Olinux-i686/Makefile >> >> > >>> Extracting Olinux-i686/../Odos/paricfg.h >> >> > >>> ./config/paricfgDOS.h.SH: line 3: Olinux-i686/../Odos/paricfg.h: >> >> > >>> No such file or directory >> >> > >>> Extracting Olinux-i686/paricfg.h >> >> > >>> Extracting Makefile >> >> > >>> Extracting scripts and macros >> >> > >>> ...in doc >> >> > >>> ...in emacs >> >> > >>> ...in misc >> >> > >>> ================================================================== >> >> > >>>=== == === Shall we try to build pari 2.3.3 (released) now (y/n)? >> >> > >>> [n] Ok. Type "make install" when you are ready >> >> > >>> Bye ! >> >> > >>> Making gp in Olinux-i686 >> >> > >>> make[1]: Entering directory >> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >> >> > >>> File ../src/funclist not changed. >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -I../src/language -o >> >> > >>> gp.o ../src/gp/gp.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -I../src/language -o gp_rl.o >> >> > >>> ../src/gp/gp_rl.c /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -I../src/graph -o >> >> > >>> plotport.o >> >> > >>> ../src/graph/plotport.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o plotnull.o ../src/graph/plotnull.c >> >> > >>> cat ../src/kernel/gmp/mp.c ../src/kernel/none/cmp.c >> >> > >>> ../src/kernel/none/gcdll.c ../src/kernel/none/ratlift.c >> >> > >>> ../src/kernel/none/invmod.c >> >> > >>> ../src/kernel/gmp/gcd.c ../src/kernel/none/mp_indep.c >> >> > >>> ../src/kernel/none/add.c >> >> > >>> >> >> > >>> > mp.c >> >> > >>> >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o mp.o mp.c /usr/bin/gcc >> >> > >>> -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o mpinl.o >> >> > >>> ../src/kernel/none/mpinl.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o alglin1.o >> >> > >>> ../src/basemath/alglin1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o alglin2.o ../src/basemath/alglin2.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o arith1.o ../src/basemath/arith1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o arith2.o ../src/basemath/arith2.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o base1.o ../src/basemath/base1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o base2.o ../src/basemath/base2.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o base3.o ../src/basemath/base3.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o base4.o ../src/basemath/base4.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o base5.o ../src/basemath/base5.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o bibli1.o ../src/basemath/bibli1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o bibli2.o ../src/basemath/bibli2.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o buch1.o ../src/basemath/buch1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o buch2.o ../src/basemath/buch2.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o buch3.o ../src/basemath/buch3.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o buch4.o ../src/basemath/buch4.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o Flx.o ../src/basemath/Flx.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o galconj.o >> >> > >>> ../src/basemath/galconj.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o gen1.o ../src/basemath/gen1.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o gen2.o >> >> > >>> ../src/basemath/gen2.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o gen3.o >> >> > >>> ../src/basemath/gen3.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o ifactor1.o >> >> > >>> ../src/basemath/ifactor1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o perm.o ../src/basemath/perm.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o polarit1.o >> >> > >>> ../src/basemath/polarit1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o polarit2.o ../src/basemath/polarit2.c /usr/bin/gcc -c -O1 >> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >> >> > >>> I../src/headers -o polarit3.o ../src/basemath/polarit3.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o Qfb.o >> >> > >>> ../src/basemath/Qfb.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o RgX.o >> >> > >>> ../src/basemath/RgX.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o rootpol.o >> >> > >>> ../src/basemath/rootpol.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o subcyclo.o ../src/basemath/subcyclo.c /usr/bin/gcc -c -O1 >> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >> >> > >>> I../src/headers -o subgroup.o ../src/basemath/subgroup.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o trans1.o >> >> > >>> ../src/basemath/trans1.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o trans2.o ../src/basemath/trans2.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o trans3.o ../src/basemath/trans3.c cd ../src/desc && >> >> > >>> /usr/bin/perl gen_member pari.desc > members-linux- i686-15930.tmp >> >> > >>> mv ../src/desc/members-linux-i686-15930.tmp >> >> > >>> ../src/language/members.h /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o anal.o ../src/language/anal.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o compat.o >> >> > >>> ../src/language/compat.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o default.o ../src/language/default.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o errmsg.o ../src/language/errmsg.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o es.o ../src/language/es.c >> >> > >>> cd ../src/desc && /usr/bin/perl gen_proto basic pari.desc > >> >> > >>> init-linux- i686-15930.tmp >> >> > >>> mv ../src/desc/init-linux-i686-15930.tmp ../src/language/init.h >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o init.o >> >> > >>> ../src/language/init.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o intnum.o >> >> > >>> ../src/language/intnum.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o members.o ../src/language/members.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o sumiter.o ../src/language/sumiter.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o aprcl.o ../src/modules/aprcl.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o elldata.o ../src/modules/elldata.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o elliptic.o ../src/modules/elliptic.c /usr/bin/gcc -c -O1 >> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >> >> > >>> I../src/headers -o galois.o ../src/modules/galois.c /usr/bin/gcc >> >> > >>> -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >> >> > >>> I../src/headers -o groupid.o ../src/modules/groupid.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o kummer.o >> >> > >>> ../src/modules/kummer.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o mpqs.o ../src/modules/mpqs.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o nffactor.o >> >> > >>> ../src/modules/nffactor.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o part.o ../src/modules/part.c >> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o stark.o >> >> > >>> ../src/modules/stark.c /usr/bin/gcc -c -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >> >> > >>> -o subfield.o ../src/modules/subfield.c /usr/bin/gcc -c -O1 >> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >> >> > >>> I../src/headers -o thue.o ../src/modules/thue.c >> >> > >>> rm -f libpari-gmp.so.2.3.3 >> >> > >>> /usr/bin/gcc -o libpari-gmp.so.2.3.3 -shared -O1 -Wall >> >> > >>> -fno-strict-aliasing -fomit-frame-pointer >> >> > >>> -Wl,-shared,-soname=libpari-gmp.so.2 mp.o mpinl.o alglin1.o >> >> > >>> alglin2.o arith1.o arith2.o base1.o base2.o base3.o base4.o >> >> > >>> base5.o bibli1.o bibli2.o buch1.o buch2.o buch3.o buch4.o Flx.o >> >> > >>> galconj.o gen1.o gen2.o gen3.o ifactor1.o perm.o polarit1.o >> >> > >>> polarit2.o polarit3.o Qfb.o RgX.o rootpol.o subcyclo.o subgroup.o >> >> > >>> trans1.o trans2.o trans3.o anal.o compat.o default.o errmsg.o es.o >> >> > >>> init.o intnum.o members.o sumiter.o aprcl.o elldata.o elliptic.o >> >> > >>> galois.o groupid.o kummer.o mpqs.o nffactor.o part.o stark.o >> >> > >>> subfield.o thue.o -lc -ldl -lm >> >> > >>> -L/tmp/jason/sage-4.2.1/local/lib -lgmp if test >> >> > >>> "libpari-gmp.so.2.3.3" != "libpari.so"; then rm -f >> >> > >>> libpari.so; ln -s libpari-gmp.so.2.3.3 libpari.so; fi >> >> > >>> if test "libpari-gmp.so.2.3.3" != "libpari-gmp.so.2"; then >> >> > >>> rm -f libpari-gmp.so.2; ln -s libpari-gmp.so.2.3.3 >> >> > >>> libpari-gmp.so.2; fi rm -f gp-dyn >> >> > >>> /usr/bin/gcc -o gp-dyn -O1 -Wall -fno-strict-aliasing >> >> > >>> -fomit-frame-pointer -Wl,--export-dynamic gp.o gp_init.o gp_rl.o >> >> > >>> highlvl.o whatnow.o plotport.o plotnull.o >> >> > >>> -L"/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686" >> >> > >>> -L/tmp/jason/sage-4.2.1/local/lib -lpari -ldl -lm - >> >> > >>> L/tmp/jason/sage-4.2.1/local/lib -lgmp >> >> > >>> rm -f ../gp >> >> > >>> ln -s Olinux-i686/gp-dyn ../gp >> >> > >>> make[1]: Leaving directory >> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >> >> > >>> jasonmox...@debian5-32:/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3 >> >> > >>>.p5 /s rc$ >> >> > >>> >> >> > >>> >> >> > >>> >> >> > >>> >> >> > >>> If the line number where the error occurs is correct then it looks >> >> > >>> like libm is at fault >> >> > >>> >> >> > >>> On Saturday 14 November 2009 19:23:19 Bill Hart wrote: >> >> > >>> > Was the option -O1 passed to gcc in all instances where the >> >> > >>> > problem occurred? >> >> > >>> > >> >> > >>> > I have heard of instances where -O1 will cause macro errors >> >> > >>> > which cause the compiler to shut down. When a higher >> >> > >>> > optimisation level is used the macro which causes the crash in >> >> > >>> > gcc is optimised away. >> >> > >>> > >> >> > >>> > If that turns out to be the issue, the solution will be to >> >> > >>> > simply compile that one file with -O2 optimisation. For most >> >> > >>> > things -O1 is far too slow anyway. >> >> > >>> > >> >> > >>> > Bill. >> >> > >>> > >> >> > >>> > 2009/11/14 William Stein <[email protected]>: >> >> > >>> > > On Sat, Nov 14, 2009 at 12:05 AM, Jason Moxham >> >> > >>> > > >> >> > >>> > > <[email protected]> wrote: >> >> > >>> > >> Hi >> >> > >>> > >> >> >> > >>> > >> I thought I would give it a try , but I cant login to >> >> > >>> > >> debian32 , doesn't like my password , although boxen and >> >> > >>> > >> fedora32 are OK ?? I thought the passwords were all the same >> >> > >>> > >> for the virtual machines. >> >> > >>> > > >> >> > >>> > > No. I've added your login info so you should be able to login >> >> > >>> > > now. >> >> > >>> > > >> >> > >>> > >> I havent managed to reproduce any error on some other 32bit >> >> > >>> > >> machines but nothing was exactly the same. >> >> > >>> > > >> >> > >>> > > You might want to try starting by doing >> >> > >>> > > >> >> > >>> > > export SAGE_FAT_BINARY="yes" >> >> > >>> > > >> >> > >>> > > then build sage-4.2.1.tar by typing "make", which is at >> >> > >>> > > >> >> > >>> > > http://sage.math.washington.edu/home/wstein/farm/src/ >> >> > >>> > > >> >> > >>> > > It'll take a few hours, but you should get the error. >> >> > >>> > > >> >> > >>> > > William > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "mpir-devel" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/mpir-devel?hl=en -~----------~----~----~----~------~----~------~--~---
