Hi,

you probably checked "keep all" parameter. it's really not properly tested. just avoid it for the moment.


Thomas


On 20/09/2016 15:50, VICIC BLAZ [PHD0900016] wrote:
Sorry, but there is another problem...

i ran:

msnoise -t 2 scan_archive --init

msnoise new_jobs

without problems.


then i tried with

msnoise -t 4 compute_cc


it starts to work, but after some time it produces this error:

...

2016-09-20 16:42:18 [DEBUG] Azimuth=258.9
Process Process-1:
Traceback (most recent call last):
   File "/home/blaz/miniconda2/lib/python2.7/multiprocessing/process.py", line 
258, in _bootstrap
     self.run()
   File "/home/blaz/miniconda2/lib/python2.7/multiprocessing/process.py", line 
114, in run
     self._target(*self._args, **self._kwargs)
   File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/msnoise/s03compute_cc.py", 
line 683, in main
     export_allcorr(db, ccfid, allcorr[ccfid])
   File "/home/blaz/miniconda2/lib/python2.7/site-packages/msnoise/api.py", 
line 825, in export_allcorr
     df.to_hdf(os.path.join(path, date+'.h5'), 'data')
   File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/pandas/core/generic.py", 
line 1101, in to_hdf
     return pytables.to_hdf(path_or_buf, key, self, **kwargs)
   File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/pandas/io/pytables.py", line 
259, in to_hdf
     complib=complib) as store:
   File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/pandas/io/pytables.py", line 
389, in __init__
     'importing'.format(ex=str(ex)))
ImportError: HDFStore requires PyTables, "No module named tables" problem 
importing

I tried reinstalling PyTables without luck.


Thanks!


________________________________
From: msnoise-boun...@mailman-as.oma.be <msnoise-boun...@mailman-as.oma.be> on behalf 
of VICIC BLAZ [PHD0900016] <blaz.vi...@phd.units.it>
Sent: Tuesday, September 20, 2016 3:43:22 PM
To: msnoise@mailman-as.oma.be
Subject: Re: [MSNoise] Station list

Thanks, it works now.


Bla┼ż

________________________________
From: msnoise-boun...@mailman-as.oma.be <msnoise-boun...@mailman-as.oma.be> on behalf 
of Thomas Lecocq <thomas.lec...@seismology.be>
Sent: Tuesday, September 20, 2016 3:01:07 PM
To: msnoise@mailman-as.oma.be
Subject: Re: [MSNoise] Station list

Hi,

You have to import data_structure too :

from msnoise.data_structures import data_structure


otherwise it'll fail (your custom.py file is not valid, fails at import).

Thomas


On 20/09/2016 12:59, VICIC BLAZ [PHD0900016] wrote:
Thank you.


Which brings me to the 2nd question...

I tried to populate with this command, but of course it is not working...


What I tried:


in the folder

msnoise/data I have put a miniseed file of one station of one day.

Name of the miniseed is in the format:

STA.NET.CHAN.YEAR.DAY


as data_folder in settings I have set this folder.


in the data_structures.py I added this line:

data_structure['SEI'] = "STA.NET.CHAN.YEAR.DAY"


i created a custom.py script:


from obspy import read

data_structure['SEI'] = "STA.NET.CHAN.YEAR.DAY"

def populate():
      st = read("*")
      st.merge()

      stations = []

      for tr in st:
          sta = str(tr.stats.station)
          net = str(tr.stats.network)
          stations.append(str("%s_%s") % (net, sta))

      return stations

So,now i have main folder with sub folder data, where I have miniseed file. in 
the main folder I put custom.py and db.ini and, if I understand right, run 
msnoise populate from here. In the browser I set data_folder to where my 
miniseed is and data_structure as SEI.

When i run the populate command, i get error:


()
Populating the Station table
()
Can't parse the archive for format SEI !
trying to import local parser (should return a station list)
()
No file named custom.py in the /home/blaz/Documents/msnoise folder

(custom.py IS in /home/blaz/Documents/msnoise)
I hope I was clear enough.

Thanks!





________________________________
From: msnoise-boun...@mailman-as.oma.be <msnoise-boun...@mailman-as.oma.be> on behalf 
of Thomas Lecocq <thomas.lec...@seismology.be>
Sent: Tuesday, September 20, 2016 12:56:56 PM
To: msnoise@mailman-as.oma.be
Subject: Re: [MSNoise] Station list

Hi,

Yes, this bug was recently reported by another user and I haven't had
time to fix it.

The best way to add the station currently is to use the "msnoise
populate" command.

Cheers,

Thomas


On 20/09/2016 11:51, VICIC BLAZ [PHD0900016] wrote:
Dear all


I would like to try to use msnoise. I installed it on Ubuntu 16.04, and as far 
as I know, everything was installed as planed.

Now, I open msnoise admin and try to manually add stations in the browser. I 
set NET, STA, X, Y, ALT, COORD and click save. When I do that, I get a lot of 
errors:


     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
2000, in __call__

return self.wsgi_app(environ, start_response)

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1991, in wsgi_app

response = self.make_response(self.handle_exception(e))

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1567, in handle_exception

reraise(exc_type, exc_value, tb)

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1988, in wsgi_app

response = self.full_dispatch_request()

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1641, in full_dispatch_request

rv = self.handle_user_exception(e)

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1544, in handle_user_exception

reraise(exc_type, exc_value, tb)

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1639, in full_dispatch_request

rv = self.dispatch_request()

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 
1625, in dispatch_request

return self.view_functions[rule.endpoint](**req.view_args)

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/base.py", 
line 69, in inner

return self._run_view(f, *args, **kwargs)

     *
File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/base.py", 
line 368, in _run_view

return fn(self, *args, **kwargs)

     *
File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/model/base.py", 
line 1920, in create_view

model = self.create_model(form)

     *
File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/contrib/sqla/view.py",
 line 1028, in create_model

if not self.handle_view_exception(ex):

     *
File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/contrib/sqla/view.py",
 line 1011, in handle_view_exception

return super(ModelView, self).handle_view_exception(exc)

     *
File 
"/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/contrib/sqla/view.py",
 line 1022, in create_model

model = self.model()

TypeError: __init__() takes exactly 9 arguments (1 given)



What am I doing wrong?


Thanks,

Blaz
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