Dear MSNoise users, I'm trying to install the sara plugin on my computer but I'm experiencing some problems (see attached).
Do you have any idea of what could be the problem? Thanks in advance for your help, Jos
[jos@localhost ~]$ pip install http://msnoise.org/msnoise-sara-master.zip Collecting http://msnoise.org/msnoise-sara-master.zip Downloading http://msnoise.org/msnoise-sara-master.zip - 174kB 259kB/s Collecting msnoise (from msnoise-sara==0.1a0) Downloading https://files.pythonhosted.org/packages/1b/21/90b7e922f68c1b6ab24d8e40848c8cd0cacd546c6f2f588044bd78c46834/msnoise-1.5.1.tar.gz (30.7MB) 100% |ââââââââââââââââââââââââââââââââ| 30.7MB 583kB/s Requirement already satisfied: bottleneck in ./anaconda2/lib/python2.7/site-packages (from msnoise-sara==0.1a0) (1.2.1) Requirement already satisfied: setuptools in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (40.2.0) Requirement already satisfied: numpy>=1.0 in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (1.15.2) Requirement already satisfied: scipy in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (1.1.0) Requirement already satisfied: pandas in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (0.23.4) Requirement already satisfied: matplotlib in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (2.2.3) Requirement already satisfied: sqlalchemy in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (1.2.11) Requirement already satisfied: obspy in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (1.1.0) Requirement already satisfied: click in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (6.7) Collecting pymysql (from msnoise->msnoise-sara==0.1a0) Downloading https://files.pythonhosted.org/packages/a7/7d/682c4a7da195a678047c8f1c51bb7682aaedee1dca7547883c3993ca9282/PyMySQL-0.9.2-py2.py3-none-any.whl (47kB) 100% |ââââââââââââââââââââââââââââââââ| 51kB 1.1MB/s Requirement already satisfied: flask in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (1.0.2) Requirement already satisfied: flask-admin in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (1.5.2) Requirement already satisfied: flask-wtf in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (0.14.2) Requirement already satisfied: markdown in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (3.0.1) Requirement already satisfied: folium in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (0.6.0) Requirement already satisfied: wtforms in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (2.2.1) Requirement already satisfied: jinja2 in ./anaconda2/lib/python2.7/site-packages (from msnoise->msnoise-sara==0.1a0) (2.10) Requirement already satisfied: python-dateutil>=2.5.0 in ./anaconda2/lib/python2.7/site-packages (from pandas->msnoise->msnoise-sara==0.1a0) (2.7.3) Requirement already satisfied: pytz>=2011k in ./anaconda2/lib/python2.7/site-packages (from pandas->msnoise->msnoise-sara==0.1a0) (2018.5) Requirement already satisfied: cycler>=0.10 in ./anaconda2/lib/python2.7/site-packages (from matplotlib->msnoise->msnoise-sara==0.1a0) (0.10.0) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in ./anaconda2/lib/python2.7/site-packages (from matplotlib->msnoise->msnoise-sara==0.1a0) (2.2.0) Requirement already satisfied: six>=1.10 in ./anaconda2/lib/python2.7/site-packages (from matplotlib->msnoise->msnoise-sara==0.1a0) (1.11.0) Requirement already satisfied: kiwisolver>=1.0.1 in ./anaconda2/lib/python2.7/site-packages (from matplotlib->msnoise->msnoise-sara==0.1a0) (1.0.1) Requirement already satisfied: backports.functools_lru_cache in ./anaconda2/lib/python2.7/site-packages (from matplotlib->msnoise->msnoise-sara==0.1a0) (1.5) Requirement already satisfied: subprocess32 in ./anaconda2/lib/python2.7/site-packages (from matplotlib->msnoise->msnoise-sara==0.1a0) (3.5.2) Requirement already satisfied: future>=0.12.4 in ./anaconda2/lib/python2.7/site-packages (from obspy->msnoise->msnoise-sara==0.1a0) (0.16.0) Requirement already satisfied: lxml in ./anaconda2/lib/python2.7/site-packages (from obspy->msnoise->msnoise-sara==0.1a0) (4.2.5) Requirement already satisfied: decorator in ./anaconda2/lib/python2.7/site-packages (from obspy->msnoise->msnoise-sara==0.1a0) (4.3.0) Requirement already satisfied: requests in ./anaconda2/lib/python2.7/site-packages (from obspy->msnoise->msnoise-sara==0.1a0) (2.19.1) Requirement already satisfied: cryptography in ./anaconda2/lib/python2.7/site-packages (from pymysql->msnoise->msnoise-sara==0.1a0) (2.3.1) Requirement already satisfied: Werkzeug>=0.14 in ./anaconda2/lib/python2.7/site-packages (from flask->msnoise->msnoise-sara==0.1a0) (0.14.1) Requirement already satisfied: itsdangerous>=0.24 in ./anaconda2/lib/python2.7/site-packages (from flask->msnoise->msnoise-sara==0.1a0) (0.24) Requirement already satisfied: branca>=0.3.0 in ./anaconda2/lib/python2.7/site-packages (from folium->msnoise->msnoise-sara==0.1a0) (0.3.0) Requirement already satisfied: MarkupSafe>=0.23 in ./anaconda2/lib/python2.7/site-packages (from jinja2->msnoise->msnoise-sara==0.1a0) (1.0) Requirement already satisfied: idna<2.8,>=2.5 in ./anaconda2/lib/python2.7/site-packages (from requests->obspy->msnoise->msnoise-sara==0.1a0) (2.7) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in ./anaconda2/lib/python2.7/site-packages (from requests->obspy->msnoise->msnoise-sara==0.1a0) (3.0.4) Requirement already satisfied: urllib3<1.24,>=1.21.1 in ./anaconda2/lib/python2.7/site-packages (from requests->obspy->msnoise->msnoise-sara==0.1a0) (1.23) Requirement already satisfied: certifi>=2017.4.17 in ./anaconda2/lib/python2.7/site-packages (from requests->obspy->msnoise->msnoise-sara==0.1a0) (2018.10.15) Requirement already satisfied: asn1crypto>=0.21.0 in ./anaconda2/lib/python2.7/site-packages (from cryptography->pymysql->msnoise->msnoise-sara==0.1a0) (0.24.0) Requirement already satisfied: cffi!=1.11.3,>=1.7 in ./anaconda2/lib/python2.7/site-packages (from cryptography->pymysql->msnoise->msnoise-sara==0.1a0) (1.11.5) Requirement already satisfied: enum34 in ./anaconda2/lib/python2.7/site-packages (from cryptography->pymysql->msnoise->msnoise-sara==0.1a0) (1.1.6) Requirement already satisfied: ipaddress in ./anaconda2/lib/python2.7/site-packages (from cryptography->pymysql->msnoise->msnoise-sara==0.1a0) (1.0.22) Requirement already satisfied: pycparser in ./anaconda2/lib/python2.7/site-packages (from cffi!=1.11.3,>=1.7->cryptography->pymysql->msnoise->msnoise-sara==0.1a0) (2.18) Building wheels for collected packages: msnoise-sara, msnoise Running setup.py bdist_wheel for msnoise-sara ... done Stored in directory: /home/jos/.cache/pip/wheels/e7/40/49/9960aa8d5f9db2cdd5f1301be1bbfc0fdbc58567ea407aa54b Running setup.py bdist_wheel for msnoise ... done Stored in directory: /home/jos/.cache/pip/wheels/d4/aa/66/14f758f735f603278de5ee5baa460cf799c84244b9ad3b7681 Successfully built msnoise-sara msnoise twisted 18.7.0 requires PyHamcrest>=1.9.0, which is not installed. grin 1.2.1 requires argparse>=1.1, which is not installed. Installing collected packages: pymysql, msnoise, msnoise-sara Successfully installed msnoise-1.5.1 msnoise-sara-0.1a0 pymysql-0.9.2 You are using pip version 10.0.1, however version 18.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [jos@localhost ~]$ msnoise p sara install Usage: msnoise p [OPTIONS] COMMAND [ARGS]... Try "msnoise p --help" for help. Error: No such command "sara".
[jos@localhost Msnoise_ovg]$ msnoise info General: MSNoise is installed in: /usr/lib/python2.7/site-packages - db.ini is present Configuration: - /run/media/jos/KivuSNet/SDSarchive/Transmission/ does not exists ! - CROSS_CORRELATIONS does not exists (and that is normal because keep_all=False) Raw config bits: "D"efault or "M"odified (green) M data_folder: /run/media/jos/KivuSNet/SDSarchive/Transmission/ D output_folder: CROSS_CORRELATIONS D data_structure: SDS D network: * D channels: * M startdate: 2017-01-01 M enddate: 2017-05-31 D analysis_duration: 86400 D cc_sampling_rate: 20.0 D resampling_method: Lanczos D preprocess_lowpass: 8.0 D preprocess_highpass: 0.01 D remove_response: N D response_format: dataless D response_path: inventory D response_prefilt: (0.005, 0.006, 30.0, 35.0) D maxlag: 120. D corr_duration: 1800. D overlap: 0.0 D windsorizing: 3 D whitening: A D stack_method: linear D pws_timegate: 10.0 D pws_power: 2.0 D crondays: -1 D components_to_compute: ZZ D autocorr: N D keep_all: N D keep_days: Y M ref_begin: 2012-01-01 M ref_end: 2019-01-01 D mov_stack: 5 D export_format: MSEED D sac_format: doublets D dtt_lag: static D dtt_v: 1.0 D dtt_minlag: 5.0 D dtt_width: 30.0 D dtt_sides: both D dtt_mincoh: 0.65 D dtt_maxerr: 0.1 D dtt_maxdt: 0.1 M plugins: msnoise_sara Filters: ID: [low:high] [mwcs_low:mwcs_high] mwcs_wlen mwcs_step used Stations: AF.BOBN 0.0000 0.0000 0.0 UTM Y KV.BULE 0.0000 0.0000 0.0 UTM Y KV.GOM 0.0000 0.0000 0.0 UTM Y KV.IDJ 0.0000 0.0000 0.0 UTM Y KV.KBTI 0.0000 0.0000 0.0 UTM Y KV.KTSH 0.0000 0.0000 0.0 UTM Y KV.LBGA 0.0000 0.0000 0.0 UTM Y KV.MUNI 0.0000 0.0000 0.0 UTM Y KV.MUSK 0.0000 0.0000 0.0 UTM Y KV.NYI 0.0000 0.0000 0.0 UTM Y KV.RGB 0.0000 0.0000 0.0 UTM Y KV.RSY 0.0000 0.0000 0.0 UTM Y KV.SAKE 0.0000 0.0000 0.0 UTM Y KV.TGO 0.0000 0.0000 0.0 UTM Y CC Jobs: DTT Jobs:
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