Attached.. something to do with libumad i guess..
interesting enough, if i run mtt driectly from the head node (before i was submitting it as a batch job), the C test passes, but the configure is picking up g77 instead gfortran, which fails the f77 tests since gcc-4.2.0 doesn't have g77..
Jeff Squyres wrote:
Yoinks. :-(What does the corresponding config.log say? It should contain the exact error that occurred.This configure test is simply checking to see if the C compiler works. IIRC, it's trying to compile, link, and run a trivial C application (something akin to "hello world").On Sep 21, 2007, at 1:30 PM, Mohamad Chaarawi wrote:Hey all,I'm trying to execute the collective bakeoff tests for OMPI, MPICH2, and MVAPICH2. OMPI and MPICH2 are working out fine, However when MVAPICH2 is configuring, it gives an error with the C compiler, pasted at the end..Note that I get the error when im running the mtt client. When i go in the scratch directory to the MVAPICH2 sources and configure it myself,with the same configure arguments that it did from config.log, it worksout fine.. Ive been banging my head a while now to figure this out, but i got nowhere. Probably it's some environment settings being messed up somewhere, but i don't know.. If anyone has stumbled upon this before, let me know.. I attached my ini file.. OUT:Configuring MVAPICH2... OUT:Configuring MPICH2 version MVAPICH2-0.9.8 with--prefix=/home/mschaara/mtt-testing/scratch-coll/installs/NhjQ/ install--with-device=osu_ch3:mrail --with-rdma=gen2 --with-pm=mpd --disable-romio --without-mpe OUT:sourcing/home/mschaara/mtt-testing/scratch-coll/installs/NhjQ/src/ mvapich2-0.9.8p3/src/pm/mpd/setup_pm OUT:checking for gcc... OUT:gcc OUT:checking for C compiler default output file name... OUT:configure: error: C compiler cannot create executables See `config.log' for more details. OUT:Configuring MPICH2 version MVAPICH2-0.9.8 with--prefix=/home/mschaara/mtt-testing/scratch-coll/installs/NhjQ/ install--with-device=osu_ch3:mrail --with-rdma=gen2 --with-pm=mpd --disable-romio --without-mpe sourcing/home/mschaara/mtt-testing/scratch-coll/installs/NhjQ/src/ mvapich2-0.9.8p3/src/pm/mpd/setup_pm checking for gcc... gccchecking for C compiler default output file name... configure: error: Ccompiler cannot create executables See `config.log' for more details. OUT:Failure in configuration.Please file an error report to mvapich-disc...@cse.ohio- state.edu withall your log files. Command complete, exit status: 1 -- Mohamad Chaarawi Instructional Assistant http://www.cs.uh.edu/~mschaara Department of Computer Science University of Houston 4800 Calhoun, PGH Room 526 Houston, TX 77204, USA#===================================================================== =# Generic OMPI core performance testing template configuration#===================================================================== =[MTT] # Leave this string so that we can identify this data subset in the # database # OMPI Core: Use a "test" label until we're ready to run real results description = [testbake] #description = [2007 collective performance bakeoff]# OMPI Core: Use the "trial" flag until we're ready to run real resultstrial = 1 # Put other values here as relevant to your environment.#--------------------------------------------------------------------- -[Lock] # Put values here as relevant to your environment.#===================================================================== =# MPI get phase#===================================================================== =[MPI get: MVAPICH2] mpi_details = MVAPICH2 module = Downloaddownload_url = http://mvapich.cse.ohio-state.edu/download/mvapich2/ mvapich2-0.9.8p3.tar.gz#===================================================================== =# Install MPI phase#===================================================================== =[MPI install: MVAPICH2] mpi_get = mvapich2 save_stdout_on_success = 1 merge_stdout_stderr = 0 # Adjust this for your site (this is what works at Cisco). Needed to # launch in SLURM; adding this to LD_LIBRARY_PATH here propagates this # all the way through the test run phases that use this MPI install, # where the test executables will need to have this set. prepend_path = LD_LIBRARY_PATH /opt/SLURM/lib module = MVAPICH2 # Adjust this to be where your OFED is installed mvapich2_setenv = OPEN_IB_HOME /usr/local/ofed mvapich2_build_script = make.mvapich2.ofa mvapich2_compiler_name = gnu mvapich2_compiler_version = &get_gcc_version() # These are needed to launch through SLURM; adjust as appropriate. mvapich2_additional_wrapper_ldflags = -L/opt/SLURM/lib mvapich2_additional_wrapper_libs = -lpmi#===================================================================== =# MPI run details#===================================================================== =[MPI Details: MVAPICH2] # Launching through SLURM. If you use mpdboot instead, you need to # ensure that multiple mpd's on the same node don't conflict (or never # happen). exec = srun @alloc@ -n &test_np() &test_executable() &test_argv() # If not using SLURM, you'll need something like this (not tested). # You may need different hostfiles for running by slot/by node. #exec = mpiexec -np &test_np() --host &hostlist() &test_executable() network = loopback,verbs,shmem # In this example, each node has 4 CPUs, so to launch "by node", just # specify that each MPI process will use 4 CPUs. alloc = &if(&eq(&test_alloc(), "node"), "-c 2", "")#===================================================================== =# Test get phase#===================================================================== =[Test get: skampi] module = SVN svn_url = https://svn.open-mpi.org/svn/ompi-tests/trunk/skampi-5.0.1#===================================================================== =# Test build phase#===================================================================== =[Test build: skampi] test_get = skampi save_stdout_on_success = 1 merge_stdout_stderr = 1 stderr_save_lines = 100 module = Shell # Set EVERYONE_CAN_MPI_IO for HP MPI shell_build_command = <<EOT make CFLAGS="-O2 -DPRODUCE_SPARSE_OUTPUT -DEVERYONE_CAN_MPI_IO" EOT#===================================================================== =# Test Run phase#===================================================================== =[Test run: skampi] test_build = skampi pass = &and(&cmd_wifexited(), &eq(&cmd_wexitstatus(), 0)) # Timeout hueristic: 10 minutes timeout = 10:00 save_stdout_on_pass = 1# Ensure to leave this value as "-1", or performance results could be lost!stdout_save_lines = -1 merge_stdout_stderr = 1 np = &env_max_procs() argv = -i &find("mtt_.+.ski", "input_files_bakeoff") specify_module = Simple analyze_module = SKaMPI simple_pass:tests = skampi#===================================================================== =# Reporter phase#===================================================================== =[Reporter: IU database] module = MTTDatabase mttdatabase_realm = OMPI mttdatabase_url = https://www.open-mpi.org/mtt/submit/ # Change this to be the username and password for your submit user. # Get this from the OMPI MTT administrator. mttdatabase_username = uhmttdatabase_password = &stringify(&cat("/home/mschaara/mtt-testing/ mtt-db-password.txt"))# Change this to be some short string identifying your cluster. mttdatabase_platform = shark mttdatabase_debug_filename = mttdb_debug_file_perf mttdatabase_keep_debug_files = 1#--------------------------------------------------------------------- -# This is a backup reporter; it also writes results to a local text # file [Reporter: text file backup] module = TextFile textfile_filename = $phase-$section-$mpi_name-$mpi_version.txt textfile_summary_header = <<EOT Hostname: &shell("hostname") uname: &shell("uname -a") Username: &shell("who am i") EOT textfile_summary_footer = textfile_detail_header = textfile_detail_footer = textfile_textwrap = 78 _______________________________________________ mtt-users mailing list mtt-us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/mtt-users
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by configure, which was
generated by GNU Autoconf 2.59. Invocation command line was
$ ./configure
--prefix=/home/mschaara/mtt-testing/scratch-coll/installs/UvUA/install
--with-device=osu_ch3:mrail --with-rdma=gen2 --with-pm=mpd --disable-romio
--without-mpe
## --------- ##
## Platform. ##
## --------- ##
hostname = shark01
uname -m = x86_64
uname -r = 2.6.16.21-smp
uname -s = Linux
uname -v = #2 SMP Thu Mar 1 10:09:02 CST 2007
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /opt/papi-3.5.0/bin
PATH: /home/mschaara/OpenMPI/bin
PATH: /opt/gcc-4.2.0/bin
PATH: /opt/SLURM/bin
PATH: /opt/papi-3.5.0/bin
PATH: /home/mschaara/OpenMPI/bin
PATH: /opt/gcc-4.2.0/bin
PATH: /opt/SLURM/bin
PATH: /opt/papi-3.5.0/bin
PATH: /home/mschaara/OpenMPI/bin
PATH: /opt/gcc-4.2.0/bin
PATH: /opt/SLURM/bin
PATH: /home/mschaara/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/X11R6/bin
PATH: /bin
PATH: /usr/games
PATH: /opt/bin
PATH: /opt/gnome/bin
PATH: /opt/kde3/bin
PATH: /usr/lib64/jvm/jre/bin
PATH: /opt/c3-4/
PATH: /usr/local/ofed/bin
PATH: /usr/lib/mit/bin
PATH: /usr/lib/mit/sbin
PATH: /usr/local/ofed/sbin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2720: checking for gcc
configure:2746: result: gcc
configure:2990: checking for C compiler version
configure:2993: gcc --version </dev/null >&5
gcc (GCC) 4.2.0
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:2996: $? = 0
configure:2998: gcc -v </dev/null >&5
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Configured with: ../gcc-4.2.0/configure --prefix=/opt/gcc-4.2.0/
--disable-multilib --enable-languages=c,c++,fortran,java
Thread model: posix
gcc version 4.2.0
configure:3001: $? = 0
configure:3003: gcc -V </dev/null >&5
gcc: '-V' option must have argument
configure:3006: $? = 1
configure:3029: checking for C compiler default output file name
configure:3032: gcc -D_X86_64_ -D_SMP_ -DUSE_HEADER_CACHING -DONE_SIDED
-DMPID_USE_SEQUENCE_NUMBERS -D_SHMEM_COLL_ -I/usr/local/ofed/include -O2
conftest.c -L/usr/local/ofed/lib64 -libverbs -libumad -lpthread >&5
/usr/bin/ld: cannot find -libumad
collect2: ld returned 1 exit status
configure:3035: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL
| #define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL
| #define USE_LOGGING MPID_LOGGING_NONE
| #define MPICH_SINGLE_THREADED 1
| #define MPICH_THREAD_LEVEL MPI_THREAD_FUNNELED
| #define USE_THREAD_IMPL MPICH_THREAD_IMPL_NONE
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:3074: error: C compiler cannot create executables
See `config.log' for more details.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-D_X86_64_ -D_SMP_ -DUSE_HEADER_CACHING -DONE_SIDED
-DMPID_USE_SEQUENCE_NUMBERS -D_SHMEM_COLL_ -I/usr/local/ofed/include -O2'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=g++
ac_cv_env_F77_set=set
ac_cv_env_F77_value=g77
ac_cv_env_F90FLAGS_set=
ac_cv_env_F90FLAGS_value=
ac_cv_env_F90_set=set
ac_cv_env_F90_value=
ac_cv_env_FFLAGS_set=set
ac_cv_env_FFLAGS_value=-L/usr/local/ofed/lib64
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_prog_ac_ct_CC=gcc
pac_cv_my_conf_dir=/home/mschaara/mtt-testing/scratch-coll/installs/UvUA/src/mvapich2-0.9.8p3
## ----------------- ##
## Output variables. ##
## ----------------- ##
ADDRESS_KIND=''
ALLOCA=''
AR=''
BSEND_OVERHEAD=''
BUILD_TVDLL=''
CC='gcc'
CC_SHL=''
CC_SHL_DBG=''
CFLAGS='-D_X86_64_ -D_SMP_ -DUSE_HEADER_CACHING -DONE_SIDED
-DMPID_USE_SEQUENCE_NUMBERS -D_SHMEM_COLL_ -I/usr/local/ofed/include -O2'
CONFIGURE_ARGUMENTS='--prefix=/home/mschaara/mtt-testing/scratch-coll/installs/UvUA/install
--with-device=osu_ch3:mrail --with-rdma=gen2 --with-pm=mpd --disable-romio
--without-mpe'
CPP=''
CPPFLAGS=''
CREATESHLIB=''
CXX='g++'
CXXFLAGS=''
CXX_LINKPATH_SHL=''
CXX_SHL=''
C_LINKPATH_SHL=''
C_LINK_SHL=''
C_LINK_SHL_DBG=''
DEFS=''
DEVICE='osu_ch3:mrail'
DLLIMPORT=''
DOCTEXT=''
DOCTEXTSTYLE=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENABLE_SHLIB=''
ETAGS=''
ETAGSADD=''
EXAMPLE_LIBS=''
EXEEXT=''
EXTERNAL_SRC_DIRS=''
EXTRA_STATUS_DECL=''
F77='g77'
F77CPP=''
F77_COMPLEX16=''
F77_COMPLEX32=''
F77_COMPLEX8=''
F77_INCDIR=''
F77_INTEGER16=''
F77_INTEGER1=''
F77_INTEGER2=''
F77_INTEGER4=''
F77_INTEGER8=''
F77_IN_C_LIBS=''
F77_LIBDIR_LEADER=''
F77_NAME_MANGLE=''
F77_REAL16=''
F77_REAL4=''
F77_REAL8=''
F90=''
F90CPP=''
F90EXT=''
F90FLAGS=''
F90INC=''
F90INCFLAG=''
F90MODEXT=''
F90MODINCFLAG=''
F90MODINCSPEC=''
F90_LINKPATH_SHL=''
F90_SHL=''
F90_WORK_FILES_ARG=''
FC=''
FC_LINKPATH_SHL=''
FC_SHL=''
FFLAGS='-L/usr/local/ofed/lib64'
FINCLUDES=''
FLIBS=''
FWRAPNAME='fmpich'
GCC=''
HAVE_CXX_EXCEPTIONS=''
HAVE_ROMIO=''
INCLUDE_MPICXX_H=''
INSTALL_DATA=''
INSTALL_PROGRAM=''
INSTALL_SCRIPT=''
INT16_T=''
INT32_T=''
INT64_T=''
LDFLAGS=''
LIBOBJS=''
LIBS='-L/usr/local/ofed/lib64 -libverbs -libumad -lpthread'
LIBTOOL=''
LTLIBOBJS=''
MAKE=''
MAKE_DEPEND_C=''
MANY_PM='no'
MKDIR_P=''
MPE_THREAD_LIB_NAME=''
MPICC=''
MPICH_TIMER_KIND=''
MPICVSHOME=''
MPICXX=''
MPICXXLIBNAME='mpichcxx'
MPID_TIMER_TYPE=''
MPIF77=''
MPIF90=''
MPIFLIBNAME='mpich'
MPIFPMPI=''
MPILIBNAME='mpich'
MPIMODNAME=''
MPIU_DLL_SPEC_DEF=''
MPI_2COMPLEX=''
MPI_2DOUBLE_COMPLEX=''
MPI_2DOUBLE_PRECISION=''
MPI_2INT=''
MPI_2INTEGER=''
MPI_2REAL=''
MPI_AINT=''
MPI_BYTE=''
MPI_CFLAGS=''
MPI_CHAR=''
MPI_CHARACTER=''
MPI_COMPLEX16=''
MPI_COMPLEX32=''
MPI_COMPLEX8=''
MPI_COMPLEX=''
MPI_CXXFLAGS=''
MPI_DOUBLE=''
MPI_DOUBLE_COMPLEX=''
MPI_DOUBLE_INT=''
MPI_DOUBLE_PRECISION=''
MPI_F77_BYTE=''
MPI_F77_LB=''
MPI_F77_PACKED=''
MPI_F77_UB=''
MPI_F90FLAGS='-O2'
MPI_FFLAGS=''
MPI_FINT=''
MPI_FLOAT=''
MPI_FLOAT_INT=''
MPI_INT=''
MPI_INTEGER16=''
MPI_INTEGER1=''
MPI_INTEGER2=''
MPI_INTEGER4=''
MPI_INTEGER8=''
MPI_INTEGER=''
MPI_LB=''
MPI_LDFLAGS=''
MPI_LOGICAL=''
MPI_LONG=''
MPI_LONG_DOUBLE=''
MPI_LONG_DOUBLE_INT=''
MPI_LONG_INT=''
MPI_LONG_LONG=''
MPI_MAX_PROCESSOR_NAME=''
MPI_OFFSET=''
MPI_OFFSET_TYPEDEF=''
MPI_PACKED=''
MPI_REAL16=''
MPI_REAL4=''
MPI_REAL8=''
MPI_REAL=''
MPI_SHORT=''
MPI_SHORT_INT=''
MPI_SIGNED_CHAR=''
MPI_STATUS_SIZE=''
MPI_UB=''
MPI_UNSIGNED_CHAR=''
MPI_UNSIGNED_INT=''
MPI_UNSIGNED_LONG=''
MPI_UNSIGNED_LONG_LONG=''
MPI_UNSIGNED_SHORT=''
MPI_WCHAR=''
NEEDSPLIB=''
NO_WEAK_SYM=''
NO_WEAK_SYM_TARGET=''
OBJEXT=''
OFFSET_KIND=''
PACKAGE_BUGREPORT='mpich2-ma...@mcs.anl.gov'
PACKAGE_NAME='MPICH2'
PACKAGE_STRING=''
PACKAGE_TARNAME='mpich2-MVAPICH2-0.9.8'
PACKAGE_VERSION='MVAPICH2-0.9.8'
PATH_SEPARATOR=':'
PERL5=''
PERL=''
PMPIFLIBNAME='pmpich'
PMPILIBNAME='pmpich'
PROFILE_DEF_MPI=''
RANLIB=''
RANLIB_AFTER_INSTALL=''
SET_CFLAGS=''
SET_MAKE=''
SHELL='/bin/sh'
SHLIB_EXT=''
SHLIB_FROM_LO=''
SHLIB_INSTALL=''
SIZEOF_MPI_STATUS=''
TESTCPP=''
THR_CFLAGS=''
THR_CPPFLAGS=''
THR_DEFS=''
THR_LDFLAGS=''
THR_LIBS=''
VERSION='MVAPICH2-0.9.8'
VPATH=''
ac_ct_CC='gcc'
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_F90=''
ac_ct_RANLIB=''
bindings=''
bindings_dirs=''
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${prefix}/share'
debugger_dir=''
device_name='osu_ch3'
docdir='${prefix}/doc'
exec_prefix='NONE'
host_alias=''
htmldir='${prefix}/www'
includedir='${prefix}/include'
infodir='${prefix}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
logging_dir=''
logging_name='none'
logging_subdirs=''
mandir='${prefix}/man'
master_top_builddir='/home/mschaara/mtt-testing/scratch-coll/installs/UvUA/src/mvapich2-0.9.8p3'
master_top_srcdir='/home/mschaara/mtt-testing/scratch-coll/installs/UvUA/src/mvapich2-0.9.8p3'
modincdir=''
mpe_dir=''
nameserv_name=''
oldincludedir='/usr/include'
other_install_dirs=' src/pm/mpd'
other_pm_names=''
pac_prog=''
pm_name='mpd'
pmi_name='simple'
prefix='/home/mschaara/mtt-testing/scratch-coll/installs/UvUA/install'
program_transform_name='s,x,x,'
romio_dir=''
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
subsystems=' src/pmi/simple src/pm/mpd'
sysconfdir='${prefix}/etc'
target_alias=''
## ------------- ##
## Output files. ##
## ------------- ##
MPE_THREAD_FUNCS=''
MPE_THREAD_TYPEDEFS=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define HAVE_ERROR_CHECKING MPID_ERROR_LEVEL_ALL
#define MPICH_ERROR_MSG_LEVEL MPICH_ERROR_MSG_ALL
#define MPICH_SINGLE_THREADED 1
#define MPICH_THREAD_LEVEL MPI_THREAD_FUNNELED
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME ""
#define PACKAGE_STRING ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define USE_LOGGING MPID_LOGGING_NONE
#define USE_THREAD_IMPL MPICH_THREAD_IMPL_NONE
configure: exit 77
