Of course. I forgot about that; I've done very little DVD authoring under Linux -- all the Windows packages do the appropriate remuxing automagically.
Can you name some? The DVD software on Windows that I tried so far all insisted on re-encoding PVR-250 files.
Can't mplex take a program stream file, though? (I would think it would preserve the PTS data in that event..)
No, it takes elementary streams only.
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