Hi Blanz, > I found that the retention times were wrong after having imported a Xcalibur > rawdata file. I assumed that the number or > time format could have influenced the display or calculation. However > changing these settings according to the manual did not correct the > retention time issue but made it even worse (was this implementation > checked). Wrong assignment of RT is only in the seconds range but > it already starts with the second scan. Did you assume constant scan rates or > do you really read the actual retention time as it is stated in the > rawfile scan by scan ? Could you please advise how to get the correct > retention time as they are present in the rawfile.
I am not aware of any problem like this. Can you send an example data file and indicate where do you see the problem? > > Would it be possible to get the nearest MS/MS and MS3 mass spectrum included > in the final table if the rawfile was acquired with data-dependent > scanning ? This would help very much. Could you implement this feature or > would it need additional action to get it implemented ? Please let me know > what you think about implementing this special request. If you click right mouse button on a table row, you can choose "Show... MS/MS" from the popup menu. This shows the most intense MS/MS scan with the precursor mass equal to the peak you clicked on. I hope this is what you were looking for. Best regards, Tomas =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology 1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan TEL: +81-98-966-8684 ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ Mzmine-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mzmine-devel
