Hi Chiarina,
> Ok, so that's interesting to know! At least if we can extract the MSMS
> m/z/intensity pairs as text we can use that file to input the queries
> one by one, or if concatenated, using the 'batch' function into the web
> databases. I can't see how to extract that info in MZmine 2.2, even if
> the program is actually doing it internally. So in 2.3 will it be
> actually possible to access the text version of that data?
It will be possible to access the data within the MZmine data structures.
> I don't have any experience with Java programming! I just have many
> demands without being able to solve them myself :-) Sound familiar? Like
> any biologists you know?
> Anyway, I am making enquiries as to who might be able to help us with
> this in our department. Thanks for the clue! I also found out that
> Massbank already has a SOAP based API on the web, guess that will be useful!
The SOAP interface helps, indeed.
Let me know if you find someone willing to implement the module.
Cheers,
Tomas
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan
TEL: +81-98-966-8684
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