Hello Steve,
As you can see from the source of the mzML parser in MZmine
(http://mzmine.svn.sourceforge.net/viewvc/mzmine/trunk/src/net/sf/mzmine/modules/rawdatamethods/rawdataimport/fileformats/MzMLReadTask.java)
there is no support for ReferenceableParamGroup at the moment. We may add the
support in the future, but I cannot promise when this will happen (being a bit
busy lately..).
Of course, you are welcome to add the support yourself and send us a patch.
This is open-source world, after all :)
Best regards,
Tomas
On Sep 17, 2011, at 12:16 AM, Robles, Steve wrote:
> Hello again,
>
> We have multilevel data and tried putting all the cvParams for the ms-level-1
> in one ReferenceableParamGroup and all the cvParams for the ms-level-2 in
> another. This includes the MS:1000511 "ms level" term. The problem is MZmine
> doesn't seem to be able to determine the ms level for the spectra if we do
> this. I also opened the same file in ProteoWizard seems.exe and that does
> display the correct ms level. I'm attaching two sample files that differ only
> by the location of the ms level term.
>
> For now we will just have to write the ms level term to each spectrum
> element, but my question is, does MZmine read the ReferenenceableParamGroups?
> Does it just require the ms level term in the spectrum element or am I
> missing something? It would reduce file size if this term could be stored in
> the ReferenceableParamGroup.
>
> Thanks,
>
> Steven Robles
> Design Engineer - Software
> LECO Corporation - Separation Sciences
> http://www.leco.com
>
>
>
>
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> <RawCentriodCidWithMsLevelInRefParamGroup.mzML><RawCentriodCidWithMsLevelInSpectrum.mzML>------------------------------------------------------------------------------
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===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan
TEL: +81-98-966-8684
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