Thanx, I wasn't going to involve R, I just figured that baselining was an
example of where you were exporting the same data I'll be dealing with.
Thanx for the pointer. -- Martin
On Sun, Oct 14, 2012 at 9:37 PM, Tomas Pluskal <plus...@oist.jp> wrote:
> Hi Martin,
>
> I don't see the reason why R should be involved here. The easiest way is
> just to write a new java module that takes the raw data using the existing
> interface and writes a minimalistic mzML or mzXML file.
>
> E.g. take a look at the Scan.getDataPoints() method:
> http://sourceforge.net/p/mzmine/code/3244/tree/trunk/src/main/java/net/sf/mzmine/data/Scan.java
>
> Tomas
>
>
>
> On Oct 15, 2012, at 12:18 PM, Martin Lewitt <martin.lew...@veritomyx.com>
> wrote:
>
> Where would you do it? My inclination is to model it on where you pass
> the data to R. Everything has to be there I would think. Of course, I
> would put in in the proper place in the raw input/(export) menu.
>
> thanx,
> Martin
>
> On Sun, Oct 14, 2012 at 6:37 PM, Tomas Pluskal <plus...@oist.jp> wrote:
>
>> Hi Martin,
>>
>> MZmine currently does not have a module to export RAW data.
>> Implementation of such module would not be difficult, though. If you want
>> to work on that, I can assist you.
>>
>> Best regards,
>>
>> Tomas
>>
>>
>> On Oct 12, 2012, at 9:32 PM, Martin Lewitt <martin.lew...@veritomyx.com>
>> wrote:
>>
>> mzmine-devel,
>>
>> I don't see a way to export "raw" files under the raw files menu. It
>> would be helpful to be able to export intermediate results that get stored
>> as raw files for evaluation or processing by other software. If the
>> facility doesn't exist would it be easy to implement? I envision retaining
>> the scan structure in an XML or mzXML format, and a possible stretch goal
>> of being able to export just selected scans.
>>
>> regards,
>> Martin Lewitt
>> martin.lew...@veritomyx.com
>>
>> ------------------------------------------------------------------------------
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>> ===============================================
>> Tomáš Pluskal
>> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
>> University
>> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
>> WWW: https://groups.oist.jp/g0
>> TEL: +81-98-966-8684
>> Fax: +81-98-966-2890
>>
>>
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>
> ===============================================
> Tomáš Pluskal
> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
> University
> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
> WWW: https://groups.oist.jp/g0
> TEL: +81-98-966-8684
> Fax: +81-98-966-2890
>
>
>
> ------------------------------------------------------------------------------
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> Try New Relic at no cost today and get our sweet Data Nerd shirt too!
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>
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