Hi Leepika,

I do not have much experience with installing Java3D on Windows, but please 
take a look at this post by Mark Earll:
https://sourceforge.net/mailarchive/message.php?msg_id=29145581

Try copying the Java3D libraries into the JRE directory, as he suggests.

Alternatively, you can try using JRE 1.6 instead of 1.7. Some people have 
reported problems with Java3D on JRE 1.7.

Cheers,

Tomas


On Oct 26, 2012, at 11:32 PM, l...@rice.edu<mailto:l...@rice.edu> wrote:

Dear Mr. Pluskal,

Thank you for your prompt reply. I am unable to view 3D scans under MZmine. 
Here are the details that you may need:

1 I am using 2.10 version of MZmine , Windows XP professional 2002 OS, service 
pack3 with Java runtime 7. In addition to that I have  R 2.15.0 downloaded and
Java 3D 1.5.2

2. I haven't changed any settings from default values in the start script

3. If I click on one of my raw data files (processed) for 3D visualization, I 
get the following error: " IT seems that Java 3D is not installed". However I 
can verify its installation under 'Control panel'.

4. I am attaching a screenshots of the error messages I got for 3D 
visualization.

Thank you,

best wishes,
Leepika


Quoting Tomas Pluskal <plus...@oist.jp<mailto:plus...@oist.jp>>:

Hi Leepika,


1. My first concern is the inability to view data as 3D under MZmine in spite 
of downloading the latest Java 3D 1.5.2. I have not changed any settings from 
default values in the start script.

Please write a better report. See the "How to report problems with MZmine 2" 
section of the manual.


2. The other concern is the inability to do METLIN or Chempsider database 
searches. Please find attached a screenshot of the error message I received. 
For both databases I am prompted for a security token. Can you please tell me 
how to get that.

You need to register on their website to receive the tokens:
http://www.chemspider.com/Register.aspx
http://metlin.scripps.edu/soap/register.php


Cheers,

Tomas

===============================================
Tomáš Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890



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Tomáš Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890

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