Hi, I have been using MZmine2 on a Mac without any problems until the last Java update from Apple. After this update, MZmine2 quits before opening. It happens the same with a few other Java-based software. It appears that it has something to do while launching the the GUI because I get the following messages in the terminal window:
cuatri:~ Pino$ /Applications/CIENCIA/MZmine2/MZmine-2.10/startMZmine_MacOSX.command ; exit; openjdk version "1.7.0-b147" OpenJDK Runtime Environment (build 1.7.0-b147-20111031) OpenJDK 64-Bit Server VM (build 21.0-b17, mixed mode) [18:08:50|INFO|MZmineCore]: Starting MZmine 2.10 [18:08:50|FINE|TmpFileCleanup]: Checking for old temporary files... [18:08:50|FINE|MZmineCore]: Loading core classes.. [18:08:50|FINE|MZmineCore]: Initializing core classes.. [18:08:51|FINE|MZmineCore]: Loading modules [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.projectmethods.projectload.ProjectLoadModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.projectmethods.projectsave.ProjectSaveModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.projectmethods.projectsave.ProjectSaveAsModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.projectmethods.projectclose.ProjectCloseModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.batchmode.BatchModeModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.rawdataimport.RawDataImportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.peakpicking.massdetection.MassDetectionModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.masslistmethods.shoulderpeaksfilter.ShoulderPeaksFilterModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.masslistmethods.chromatogrambuilder.ChromatogramBuilderModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.peakpicking.manual.ManualPeakPickerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.peakpicking.msms.MsMsPeakPickerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.filtering.scanfilters.ScanFiltersModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.filtering.datasetfilters.DataSetFiltersModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.filtering.baselinecorrection.BaselineCorrectionModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.alignment.join.JoinAlignerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.alignment.ransac.RansacAlignerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.io.csvexport.CSVExportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.io.xmlexport.XMLExportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.io.xmlimport.XMLImportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.io.sqlexport.SQLExportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.gapfilling.peakfinder.PeakFinderModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.gapfilling.samerange.SameRangeGapFillerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.isotopes.deisotoper.IsotopeGrouperModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.isotopes.isotopeprediction.IsotopePatternCalculator [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.peakpicking.smoothing.SmoothingModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.peakpicking.deconvolution.DeconvolutionModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.peakpicking.shapemodeler.ShapeModelerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.peakpicking.peakextender.PeakExtenderModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.rawdatamethods.targetedpeakdetection.TargetedPeakDetectionModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.filtering.duplicatefilter.DuplicateFilterModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.filtering.rowsfilter.RowsFilterModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.normalization.rtnormalizer.RTNormalizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.normalization.linear.LinearNormalizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.normalization.standardcompound.StandardCompoundNormalizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.rtmzplots.cvplot.CVPlotModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.rtmzplots.logratioplot.LogratioPlotModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.projectionplots.PCAPlotModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.projectionplots.CDAPlotModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.projectionplots.SammonsPlotModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.clustering.ClusteringModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.dataanalysis.heatmaps.HeatMapModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.custom.CustomDBSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.formulaprediction.FormulaPredictionModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.fragmentsearch.FragmentSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.adductsearch.AdductSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.complexsearch.ComplexSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.dbsearch.OnlineDBSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.glycerophospholipidsearch.GPLipidSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.camera.CameraSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.peaklistmethods.identification.nist.NistMsSearchModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.tic.TICVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.spectra.SpectraVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.twod.TwoDVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.threed.ThreeDVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.neutralloss.NeutralLossVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.peaklist.PeakListTableModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.peaklist.export.IsotopePatternExportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.peaklist.export.MSMSExportModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.scatterplot.ScatterPlotVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.histogram.HistogramVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.infovisualizer.InfoVisualizerModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.visualization.intensityplot.IntensityPlotModule [18:08:51|FINEST|MZmineCore]: Loading module net.sf.mzmine.modules.tools.mzrangecalculator.MzRangeCalculatorModule [18:08:51|FINE|MZmineCore]: Initializing GUI [18:08:51|SEVERE|MZmineCore]: Could not initialize GUI(java.lang.reflect.invocationtargetexcept...@java.awt.EventQueue.invokeAndWait(EventQueue.java:1242)) logout I am using a MacBook Pro (2,4 GHz Intel Core 2 Duo) running under OS X 10.8.2 (12C60). The Java version is included in the terminal output. I did not change anything from the default settings in the startMZmine script. Thanks a lot for your help. Best regards, Pino Manuel Sánchez del Pino Depto de Bioquímica y Biología Molecular Facultad de Ciencias Biológicas Universidad de Valencia Dr. Moliner, 50 46100 Burjassot (Valencia) Tel. 34-96-3543464 Fax 34-96-3544635 e-mail: sande...@uv.es ------------------------------------------------------------------------------ Monitor your physical, virtual and cloud infrastructure from a single web console. Get in-depth insight into apps, servers, databases, vmware, SAP, cloud infrastructure, etc. Download 30-day Free Trial. Pricing starts from $795 for 25 servers or applications! http://p.sf.net/sfu/zoho_dev2dev_nov _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
