G'day, Thanks for the information.
I'm assuming you have 64-bit Windows 7. When you ran R from the command-line, did you use the following? C:\Program Files\R\R-2.15.2\bin\x64\R.exe If so, then you need to set PATH to use the 64-bit DLLs in your start script: set PATH=%PATH%;%R_HOME%\bin\x64 Similarly, you will need to set JRE_LIB_PATH to use the 64-bit DLLs. set JRI_LIB_PATH=%R_LIBS_USER%\rJava\jri\x64 Please try this and let me know how you get on. Regards, Chris. P.S. You can probably increase the value of HEAP_SIZE assuming you have lots of RAM. On 05/04/13 21:03, lisa parsons wrote: > Pleas see attached > > > On Thu, Apr 4, 2013 at 9:32 PM, Pudney Chris (ext) GBJH > <chris.pud...@syngenta.com <mailto:chris.pud...@syngenta.com>> wrote: > > G'day, > > I can help you with the R configuration. > > > > I've checked the startMZmine_Windows file: > > rem Set R environment variables. > > set R_HOME=C:\Program Files\R\R-2.15.2 > > set R_SHARE_DIR=%R_HOME%\share > > set R_INCLUDE_DIR=%R_HOME%\include > > set R_DOC_DIR=%R_HOME%\doc > > set R_LIBS_USER=%R_HOME%\library > > rem set R_LIBS_USER=%USERPROFILE%\Documents\R\win-library\2.15 > > > > R is installed in C:\Program Files\R\R-2.15.2 > > Firstly, have you installed the prerequisite packages in R as > outlined in the user manual? > http://bit.ly/MZmineManual#h.1pys305nsw0o > > If the packages are installed and R is still not working from > MZmine then could you please provide more detail about the error > you encounter. Please let us know what happens when MZmine tries > to use R. Please follow the guide-lines laid out in the user manual. > http://bit.ly/MZmineManual#h.ieegr3ccm53e > > Additionally, can you provide some information about your R > installation. Run R from the command-line (this is how MZmine uses > R). Depending on whether you have 32- or 64-bit windows, the > command will be something like: > > C:\Program Files\R\R-2.15.2\bin\i386\R.exe > > or > > C:\Program Files\R\R-2.15.2\bin\x64\R.exe > > Then send us the output of the following R commands. > > .libPaths() > packageDescription("xcms") > packageDescription("ptw") > packageDescription("rJava") > > Thanks, > Chris. > > This message may contain confidential information. If you are not > the designated recipient, please notify the sender immediately, > and delete the original and any copies. Any use of the message by > you is prohibited. > > This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited. ------------------------------------------------------------------------------ Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
