Hi Tomas,
Stupid me, path to java was simply not registered in my system. I check at home
on my Win7 on MAC, I think mzmine3 started without problems there, I used the
MAC version later.
Many thanks
Manfred
From: Tomáš Pluskal [mailto:plus...@oist.jp]
Sent: Friday, 20 December, 2013 2:49 PM
To: Developer discussion
Cc: Manfred Roman Raida
Subject: Re: [Mzmine-devel] Problems getting mzmine 2 started on Win7 64bit
Hi Manfred,
I downloaded mzmine 2 for my mac and it worked immediately, great software and
does what I need, many thanks. But now I try on my Win7 in the office and
followed the instructions to modify the .bat file, but trying to start through
the file, the console window pops up for less than a second and then nothing is
happening, no error message. All the required R files are present, all paths
are set. I tried the .bat lines in cmd and get errors from these lines:
for /f "skip=1" %%p in ('wmic os get totalvisiblememorysize') do if not defined
TOTAL_MEMORY=set TOTAL_MEMORY=%%p : %%p was unexpected this time
for /f "skip=1" %%x in ('wmic cpu get addresswidth') do if not defined
ADDRESS_WIDTH set ADDRESS_WIDTH=%%x : %%x was unexpected this time
I am not sure why this happens. On my Windows 7 system (32 bit), the original
script runs without problems. If you find the cause, please let me know.
I overcame these lines by just setting the variables to fixed numbers, the bat
now stops at java - telling me that java is not recognized as command, when I
add a path it ends with "C:/Program is no command" , I have both java 32 and 64
bit on the installed.
Try using parenthesis, e.g.
set JAVA_COMMAND="C:\Program Files\Java\jdkxxx\bin\java.exe"
or update your PATH variable to include the JDK's bin folder (Google is your
friend).
Cheers,
Tomas
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
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