Hi MZMine developers, Happy holidays !
I was checking how the Join aligner works, and noticed that inside the class net.sf.mzmine.modules.peaklistmethods.alignment.join.JoinAlignerTask, the instance variable mzWeight is never initialised in the constructor. As a result, when computing the score for alignment of rows inside RowVsRowScore, the contribution of m/z difference to the score is always 0. So, only the RT difference is used for score calculation at the moment, despite the fact that on the GUI, we can specify the weights to both m/z and RT. It seems like a bug to me ? If I'm wrong, please let me know. Thanks ! Joe ------------------------------------------------------------------------------ Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
