Hi Ali,
The problem is in this line:
set JAVA_COMMAND=C:\Program Files\Java
You need to point this variable to the java.exe program. Also, you should put
the value in double quotes, because of the space in Program Files.
Try something like this:
set JAVA_COMMAND="C:\Program Files\Java\jdk1.7.0_51\bin\java.exe"
Alternative solution is to keep the default
set JAVA_COMMAND=java
and set your PATH variable to point to the Java directory.
Best,
Tomas
On Jul 11, 2014, at 21:32, Ali Moazzami <ali.moazz...@slu.se> wrote:
>
> Hi,
>
> I have got problem to open MZmine.
>
> I have installed Java 7, 64-bit, on my computer. When I use the startup
> script (by double clicking on the windows bat file) I get the following
> message:
>
> 'C:\Program' is not recognized as an internal or external command,
> operable program or batch file.
> 'C:\Program' is not recognized as an internal or external command,
> operable program or batch file.
> Press any key to continue . . .
>
>
> I have opened and edited my bat file in notepad and save it. Does it
> automatically taken in bat file?
>
>
> I appreciate if you can help me!
> Best
> Ali
>
> Here is the copy past from notepad:
>
> @echo off
>
> rem Obtain the physical memory size
> for /f "skip=1" %%p in ('wmic os get totalvisiblememorysize') do if not
> defined TOTAL_MEMORY=set TOTAL_MEMORY=%%p
>
> rem The HEAP_SIZE variable defines the Java heap size in MB.
> rem That is the total amount of memory available to MZmine 2.
> rem By default we set this to the half of the physical memory
> rem size, but feel free to adjust according to your needs.
> set /a HEAP_SIZE=%TOTAL_MEMORY% / 1024 / 2
>
> rem Check if we are running on a 32-bit system.
> rem If yes, force the heap size to 1024 MB.
> for /f "skip=1" %%x in ('wmic cpu get addresswidth') do if not defined
> ADDRESS_WIDTH set ADDRESS_WIDTH=%%x
> if %ADDRESS_WIDTH%==32 (
> set HEAP_SIZE=1024
> )
>
> rem The TMP_FILE_DIRECTORY parameter defines the location where temporary
> rem files (parsed raw data) will be placed. Default is %TEMP%, which
> rem represents the system temporary directory.
> set TMP_FILE_DIRECTORY=%TEMP%
>
> rem Set R environment variables.
> set R_HOME=C:\Program Files\R\R-3.0.1
> set R_SHARE_DIR=%R_HOME%\share
> set R_INCLUDE_DIR=%R_HOME%\include
> set R_DOC_DIR=%R_HOME%\doc
> set R_LIBS_USER=%USERPROFILE%\Documents\R\win-library\3.0
>
> rem Include R DLLs in PATH.
> set PATH=%PATH%;%R_HOME%\bin\x64
>
> rem The directory holding the JRI shared library (libjri.so).
> set JRI_LIB_PATH=%R_LIBS_USER%\rJava\jri\x64
>
> rem It is usually not necessary to modify the JAVA_COMMAND parameter, but
> rem if you like to run a specific Java Virtual Machine, you may set the
> rem path to the java command of that JVM
> set JAVA_COMMAND=C:\Program Files\Java
>
> rem It is not necessary to modify the following section
> set JAVA_PARAMETERS=-XX:+UseParallelGC -Djava.io.tmpdir=%TMP_FILE_DIRECTORY%
> -Xms%HEAP_SIZE%m -Xmx%HEAP_SIZE%m -Djava.library.path="%JRI_LIB_PATH%"
> set CLASS_PATH=lib\MZmine-2.10.jar
> set MAIN_CLASS=net.sf.mzmine.main.MZmineCore
>
> rem Show java version, in case a problem occurs
> %JAVA_COMMAND% -version
>
>
> Ali Moazzami (Associate Professor)
> Department of Chemistry and Biotechnology
> Metabolomics core facilities
> Swedish University of Agricultural Sciences
> Box 7015, 750 07 Uppsala, Sweden
> Tel: +46-18-672048
> Mobile:+46-739403240
> E-mail: ali.moazz...@slu.se
>
> ------------------------------------------------------------------------------
> Open source business process management suite built on Java and Eclipse
> Turn processes into business applications with Bonita BPM Community Edition
> Quickly connect people, data, and systems into organized workflows
> Winner of BOSSIE, CODIE, OW2 and Gartner awards
> http://p.sf.net/sfu/Bonitasoft_______________________________________________
> Mzmine-devel mailing list
> Mzmine-devel@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
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