> I have fixed issue 1 and 3. Tomas, can you please help with #2. I don’t know
> how to move it to a separate thread.

Google is your friend :)
https://www.google.com/search?q=how+to+start+thread+in+java
But of course, I can do it. I'll take a look at it tomorrow.

>
> Also, when I cancel the main mzTab import task, how do I also cancel all
> associated raw data file import tasks?

Keep a reference to the created tasks.
Then override your task's cancel() method and make sure it cancels all
the underlying tasks.

The batch module's main task does the same thing, take a look there
for inspiration.

Tomas

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