Thanks, Tomas. I'll give it a shot.
On Mon, Feb 2, 2015 at 11:34 PM, Tomas Pluskal <plus...@oist.jp> wrote:
> Hello Rob,
>
> MZmine version 2.13, which I just released today, includes new Java3D
> libraries. So you don’t need to install them separately. In fact, I
> recommend to completely remove the Java3D libraries you previously
> installed and start with a clean Java runtime (JRE or JDK). Let me know if
> you find any problem.
>
> Best,
>
> Tomas
>
>
> On Feb 3, 2015, at 07:21, Rob Smith <2robsm...@gmail.com> wrote:
>
> Hi all,
> I'm trying to look at 3d peaks in MZmine2. I'm getting the Java3d not
> installed error.
>
> I saw a few threads on this, each advising to copy the jars to
> JAVA_HOME/jre/lib and the DLL (in this case the .so) to JAVA_HOME/bin.
>
> I have 4 options in /usr/lib/jvm to pick for JAVA_HOME. I ran java
> -version to get this:
> java -version gives me:
> java version "1.7.0_65"
> OpenJDK Runtime Environment (IcedTea 2.5.3) (7u71-2.5.3-0ubuntu0.14.04.1)
> OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)
>
> Then I opened synaptic package manager, looked up IcedTea to see that
> openjdk-7-jdk is installed. The four options I have in /usr/lib/jvm are:
>
> java-1.5.0-gcj-4.8-amd64
> java-6-openjdk-amd64
> java-1.7.0-openjdk-amd64
> java-7-openjdk-amd64
>
> I first copied the .jar and .so files to the java-7-openjdk-amd64 folder
> using the layout described above. That did not resolve the error, so I did
> the same with the remaining 3 options. The error persists.
>
> I did note that these four folders did not have JAVA_HOME/jre/lib, just
> JAVA_HOME/jre, so I copied the jars to both the jre folder and a newly
> created jre/lib. The default folder permissions are the same as the jre
> folder, and are the same as all the other .jar files in /usr/share/java,
> namely:
> -rw-r--r-- 1 root root
>
> I am using Linux, specifically Ubuntu 14.04. I installed Java3d using
> package libjava3d-java which gave me:
> j3dcore-1.5.2+dfsg.jar
> j3dcore.jar
> j3dutils.jar
> vecmath.jar
> vecmath-1.5.2.jar
>
> and
>
> libj3dcore-ogl.so
>
>
> Any suggestions? Thanks!
> Rob
>
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>
> ===============================================
> Tomas Pluskal
> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
> University
> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
> WWW: https://groups.oist.jp/g0
> TEL: +81-98-966-8684
> Fax: +81-98-966-2890
>
>
------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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