Hi Jamuna,
I think you don’t need to worry about the R warnings in the console. These
should be harmless.
However, I notice the TIC visualizer shows a strange line in the chromatogram
plot of your data. Could you perhaps send us a sample data file, so we can
debug this problem?
Tomas
On Feb 6, 2015, at 04:01, jamuna risal
<jri...@gmail.com<mailto:jri...@gmail.com>> wrote:
I am running MzMine 2.12 in 64 bit Win OS. java version 8 and R-3.1.2 in 64 bit.
I have not changed heap size but slightly adjusted the R_Home in startMzMine
script.
I converted .RAW data to MzXML format using msConvert of the proteoWizard.
After importing raw file, I did crop filter and then started the baseline
correction using peakdetection baseline corrector (Parameters: TIC, m/z bin
width of 0.5 and no. of scans left and right 20, and lwin and rwin 5 and
multiplier 1). There is a R- error message, however, at the end it says
baseline corrected and I can see that in the chromatogram also.
If somebody can suggest me what is the error and what is it doing or not doing
for the baseline correction, I would really appreciate the response.
Thanks.
jam
--
Jamuna Risal Paudel
<Baseline.PNG><command.PNG>------------------------------------------------------------------------------
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Tomas Pluskal
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1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
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hub for all things parallel software development, from weekly thought
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look and join the conversation now. http://goparallel.sourceforge.net/
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