Hi Geert, You can just remove this _JAVA_OPTIONS variable. It is not supposed to be there.
Tomas > On Apr 14, 2015, at 7:09 PM, Geert Goeminne <ge...@psb.vib-ugent.be> wrote: > > Hi Tomas, > > I found the problem, and just in case someone else would encounter the same, > here is the solution: > > in user account settings (for Windows) there is an option to change the > environment variables, and for _JAVA_OPTIONS this is automatically set to > -Xmx512M > > you can change this value to for example in my case -Xmx8170M, and then start > Mzmine and it works fine then. > > > Cheers, Geert > > From: "Tomas Pluskal" <plus...@oist.jp> > To: "Developer discussion" <mzmine-devel@lists.sourceforge.net> > Cc: "Geert Goeminne" <ge...@psb.vib-ugent.be> > Sent: Monday, April 13, 2015 3:45:42 PM > Subject: Re: [Mzmine-devel] MZmine 2.14.1 > > Hi Geert, > > OK now I understand. I thought you had modified the file. > > I suspect that your environment variables > (http://en.wikipedia.org/wiki/Environment_variable) contain a variable called > _JAVA_OPTIONS that is causing trouble. > Try to remove it and your problem should disappear. > > Best, > > Tomas > > > > > > On Apr 13, 2015, at 9:45 PM, Geert Goeminne <ge...@psb.vib-ugent.be> wrote: > > > > Hi Tomas, > > > > Actually i did not change the script at all, i just download version 2.14.1 > > from the website and extracted it. > > > > I guess you could not find the picture i embedded i the email? I will > > attach it now instead of embed it in the email. > > > > for the rest i did not do anything at all but clicking the startup command, > > the command starts and then you get the message in the cmd.exe > > > > Checking physical memory size... > > Found 16341 MB memory, 64-bit system > > Java heap size set to 8170 MB > > Picked up _JAVA_OPTIONS: -Xmx512M > > Error occurred during initialization of VM > > Initial heap size set to a larger value than the maximum heap size > > Press any key to continue . . . > > > > > > > > When i click any key, nothing happens. > > > > Cheers, Geert > > > > From: "Tomas Pluskal" <plus...@oist.jp> > > To: "Developer discussion" <mzmine-devel@lists.sourceforge.net> > > Cc: "Geert Goeminne" <ge...@psb.vib-ugent.be> > > Sent: Monday, April 13, 2015 2:38:56 PM > > Subject: Re: [Mzmine-devel] MZmine 2.14.1 > > > > Hi Geert, > > > > Please write exactly what you did, or send a copy of your startMZmine > > script so I can give you advice. > > > > Tomas > > > > > > > > > On Apr 13, 2015, at 7:19 PM, Geert Goeminne <ge...@psb.vib-ugent.be> > > > wrote: > > > > > > Dear Tomas, > > > > > > Every time i install the latest version i have this issue with the heap > > > size, and i have no idea which value i should use. > > > The manual says to edit it in a text editor, which i try, but what values > > > here should i use when i get this warning message: > > > > > > <1428920228629.png> > > > > > > If i click any key then nothing happens anymore. > > > Couldn't you iinclude in this warning message what should be done in this > > > case? > > > to my knowledge, my max heap size is 16341Mb and it's set at much less as > > > default so why this doesn't work? > > > > > > Appreciate your comments on this, > > > > > > Cheers, Geert. > > > > > > > > =============================================== > Tomas Pluskal > G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University > 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan > WWW: https://groups.oist.jp/g0 > TEL: +81-98-966-8684 > Fax: +81-98-966-2890 > > > > > -- > Geert Goeminne > Mass Spectrometry Expert > Tel:+32 (0)9 331 38 37 > <201501-PSB logo-liggend.png> > Department of Plant Systems Biology > VIB, Ghent University > Technologiepark 927 > 9052 Ghent, Belgium > http://www.psb.ugent.be > <undefined.png> > > ------------------------------------------------------------------------------ > BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT > Develop your own process in accordance with the BPMN 2 standard > Learn Process modeling best practices with Bonita BPM through live exercises > http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_ > source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF_______________________________________________ > Mzmine-devel mailing list > Mzmine-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mzmine-devel =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan WWW: https://groups.oist.jp/g0 TEL: +81-98-966-8684 Fax: +81-98-966-2890 ------------------------------------------------------------------------------ BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT Develop your own process in accordance with the BPMN 2 standard Learn Process modeling best practices with Bonita BPM through live exercises http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_ source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
