Hi Brandi, It's hard to guess where the problem is, but since many people were complaining about the connection to R in MZmine, we recently replaced the R interface with a better one (RServe instead of JRI). The new interface does not require any parameters in the startMZmine script. This change will be included in the next version (2.15). So please wait for a few weeks.
Best regards, Tomas On Fri, Jul 10, 2015 at 11:05 AM, Brandi West <b.w...@auckland.ac.nz> wrote: > Hello, > > I have been trying to get R to work in MZmine and have had nothing but > problems. Any R application (easiest one to list is baseline correction) > and MZmine cannot find R. I have tried MZmine 2.10.38 (MZmine PI) and > 2.14.2 both encountered the same errors. > > The steps I've undergone are simply uploading my files (25 .mzXML files) and > select baseline correction. Regardless of what conditions I choose I get > the same error. > > There is no report in the cmd window which runs with MZ mine. > > I'm running Windows 7 (64 bit) > my Java is Version 8 update 45 > R --version gave me the following information in Rstudio... > > R version 3.2.0 (2015-04-16) -- "Full of Ingredients" > Copyright (C) 2015 The R Foundation for Statistical Computing > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > > Thank you for your help, > > Brandi West > > ------------------------------------------------------------------------------ > Don't Limit Your Business. Reach for the Cloud. > GigeNET's Cloud Solutions provide you with the tools and support that > you need to offload your IT needs and focus on growing your business. > Configured For All Businesses. Start Your Cloud Today. > https://www.gigenetcloud.com/ > _______________________________________________ > Mzmine-devel mailing list > Mzmine-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mzmine-devel > ------------------------------------------------------------------------------ Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs and focus on growing your business. Configured For All Businesses. Start Your Cloud Today. https://www.gigenetcloud.com/ _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
