Did you verify they are building with the same version of .Net framework? Also, 
are you doing the nant and visual studio build on the same PC for comparison?

From: Paulo Mello [mailto:paulo...@gmail.com]
Sent: Tuesday, November 23, 2010 6:19 AM
To: nant-users@lists.sourceforge.net
Subject: [NAnt-users] Different file sizes when publishing a web site using Nant

Hi Everyone!

I have a solution with one website and 4 associated libraries.
I used the Nant to build this solution and after that I compared the results 
with the "normal" publish using visual studio.
I realize that the dlls and its pdbs have different sizes even if I published 
in debug mode using visual studio and using a parameter to build in debug mode 
on nant.

This is the .build file I used on Nant.

<?xml version="1.0"?>
<project name="NAnt Example" default="build">
  <property name="nant.contrib.path" value="C:\Arquivos de 
programas\nant\nantcontrib\bin" />
  <target name="_CopyWebApplication" Condition="'$(OutDir)' != '$(OutputPath)'" 
DependsOnTargets="ResolveAssemblyReferences">
    <loadtasks assembly="${nant.contrib.path}\NAnt.Contrib.Tasks.dll" />
    <msbuild project="../SolutionName.sln" target="Rebuild">
      <!--<arg value="/p:Configuration=Debug" />-->
      <!--<arg value="/t:publish" />
      <arg value="/p:OutDir=$(WebProjectOutputDir)\bin\" />
      <arg value="/p:WebProjectOutputDir=c:\temp\" />
    </msbuild>
  </target>
</project>

Any help will be appreciated!
Thanks,
Paulo Mello.
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