Config files are in /etc/neo4j/
Data and log files are in /var/lib/neo4j/

BTW I noticed that when I installed the Debian package the Neo4j instance 
ignored my Linux optimization parameters as detailed on this doc page:
http://docs.neo4j.org/chunked/milestone/linux-performance-guide.html#_setting_the_number_of_open_files

To clarify, I'd previously made the changes recommended in the Linux 
Performance Guide, then upgraded using the .deb package, and Neo ignored 
those parameters. I ended up going back to the source installation.

Just something to note.

Cheers,

Brad

On Tuesday, December 17, 2013 7:45:41 AM UTC-8, David Przybilla wrote:
>
> As far  as I understand the only difference would be
> the location of your files.
> So  if you use the .deb they would follow the usual standards. i.e: neo4j 
> executable would be in usr/bin.
> probably the conf will be in /etc/conf... and so on.
>
> If you download the .tar.gz neo4j config files, executable and data folder 
> will live in a single folder.
>

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