Hello
thanks for this quick answer, here is the full stack trace :
java.lang.RuntimeException: Error starting
org.neo4j.kernel.EmbeddedGraphDatabase,
/home/roald/Documents/Masterhesis/BioNeo4JDB
at
org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:333)
at
org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:63)
at
org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at
org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at
org.neo4j.graphdb.factory.GraphDatabaseFactory.newEmbeddedDatabase(GraphDatabaseFactory.java:69)
at
com.bioneo4j.loader.BioNeo4JLoader.loadGremlinBioNeo4JGraph(BioNeo4JLoader.java:24)
at
com.bioneo4j.loader.BioNeo4JLoader$loadGremlinBioNeo4JGraph.call(Unknown
Source)
at
org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at
org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at
org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:120)
at groovysh_evaluate.run(groovysh_evaluate:52)
at groovysh_evaluate$run.call(Unknown Source)
at
org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
at groovysh_evaluate$run.call(Unknown Source)
at
org.codehaus.groovy.tools.shell.Interpreter.evaluate(Interpreter.groovy:67)
at org.codehaus.groovy.tools.shell.Interpreter$evaluate.call(Unknown
Source)
at org.codehaus.groovy.tools.shell.Groovysh.execute(Groovysh.groovy:152)
at org.codehaus.groovy.tools.shell.Shell.leftShift(Shell.groovy:114)
at org.codehaus.groovy.tools.shell.Shell$leftShift$0.call(Unknown
Source)
at
org.codehaus.groovy.tools.shell.ShellRunner.work(ShellRunner.groovy:88)
at
org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$work(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at
org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at
org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at
org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at
org.codehaus.groovy.tools.shell.InteractiveShellRunner.work(InteractiveShellRunner.groovy:100)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at
org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite$PogoCachedMethodSiteNoUnwrapNoCoerce.invoke(PogoMetaMethodSite.java:272)
at
org.codehaus.groovy.runtime.callsite.PogoMetaMethodSite.callCurrent(PogoMetaMethodSite.java:52)
at
org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
at
org.codehaus.groovy.tools.shell.ShellRunner.run(ShellRunner.groovy:57)
at
org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$run(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at
org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1079)
at
org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:128)
at
org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:148)
at
org.codehaus.groovy.tools.shell.InteractiveShellRunner.run(InteractiveShellRunner.groovy:66)
at com.tinkerpop.gremlin.groovy.console.Console.<init>(Console.java:60)
at com.tinkerpop.gremlin.groovy.console.Console.main(Console.java:102)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.extension.KernelExtensions@44c79f32' failed to
initialize. Please see attached cause exception.
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:480)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:72)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:106)
at
org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:310)
... 51 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.jmx.impl.JmxKernelExtension@6256ac4f' failed to initialize.
Please see attached cause exception.
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:480)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:72)
at
org.neo4j.kernel.extension.KernelExtensions.init(KernelExtensions.java:112)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:474)
... 54 more
Caused by: java.lang.NoSuchMethodError:
org.neo4j.kernel.GraphDatabaseAPI.getTxManager()Ljavax/transaction/TransactionManager;
at
org.neo4j.management.impl.TransactionManagerBean$TransactionManagerImpl.<init>(TransactionManagerBean.java:55)
at
org.neo4j.management.impl.TransactionManagerBean.createMBean(TransactionManagerBean.java:44)
at
org.neo4j.jmx.impl.ManagementBeanProvider.createMXBean(ManagementBeanProvider.java:74)
at
org.neo4j.jmx.impl.ManagementBeanProvider.createMXBeans(ManagementBeanProvider.java:66)
at
org.neo4j.jmx.impl.ManagementBeanProvider.loadBeans(ManagementBeanProvider.java:82)
at
org.neo4j.jmx.impl.JmxKernelExtension.init(JmxKernelExtension.java:75)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:474)
... 57 more
Yes maybe I had to try to set up a real project with maven.
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