Hey Jan, this is really great I'll have a look at it properly later. A 
couple of quick questions:

1) How much data is there on each node/edge? 
2) What was the memory setup for both DBs? As Neo wants to load everything 
into memory your 1.2 million nodes and 3 million relationships will put a 
strain on your 4Gb box.
3) Can we see the Neo configuration?
4) Why do you say Neo was bigger on disk (looks smaller in table)?
5) What protocol were you using to talk to Neo?

I guess it is "obvious" that using the API will always be a little faster 
than using the interpreted CYPHER statements (because of the nature of the 
product), but maybe you could share what the Cypher query was and what you 
replaced it with?

M

On Thursday, 4 September 2014 11:34:35 UTC+1, Jan Andrs wrote:
>
> We needed to decide whether is better to create metadata repository in our 
> client's data warehouse with Neo4j or with PostgreSQL, so we ran a little 
> benchmark test:
>
> http://mantatools.com/metadata-repository-benchmark-postgresql-vs-neo4j/
>
> Major reason was to decide if is better to to use graph databases or 
> traditional relational ones. Neo4j performed well, but not with Cypher, we 
> had to do our custom solution using Neo4j Java API. 
>
> Do you have any experience with similar tests? We are also planning to run 
> another one with more databases and with more conclusive results. 
>
>
>

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