You can run a consistency check on your graph:

http://www.markhneedham.com/blog/2014/01/22/neo4j-backup-store-copy-and-consistency-check/
 
<http://www.markhneedham.com/blog/2014/01/22/neo4j-backup-store-copy-and-consistency-check/>

You can use my StoryCopy tool to migrate/compact your store:

https://github.com/jexp/store-utils <https://github.com/jexp/store-utils>

HTH

Michael

> Am 14.05.2015 um 08:42 schrieb Vaibhav Aiyar <[email protected]>:
> 
> Would that not be a waste of space? Why would it need 19G if all it needs is 
> to mark the blocks unused if there is no data?
> We are concerned that the size may have increased due to some corruption in 
> the files. 
> We wanted to load the entire graph into memory to improve performance and 19G 
> is too large.
> 
> On Wednesday, May 13, 2015 at 6:36:32 PM UTC-5, Michael Hunger wrote:
> I don't think disk space is freed, just the blocks marked as unused.
> 
> And the restart will start using those blocks (for nodes and rels)
> For properties etc. the blocks will be reused directly.
> 
> M
> 
>> Am 13.05.2015 um 16:28 schrieb Vaibhav Aiyar <[email protected] 
>> <javascript:>>:
>> 
>> Hi,
>> 
>> When does NEO4j cleanup neostore.propertystore.db.strings store file.
>> 
>> We see huge variations in the size of the files in our three environments 
>> even though the node count and the data is similar.
>> Below are the sizes of this files in our three environments along with node 
>> counts
>> 
>> DEV: 19GB - 55699 nodes
>> TEST: 7.4GB - 184023 nodes
>> PROD: 700 MB - 258845 nodes
>> 
>> I deleted around 3000 Nodes is DEV which have the most number of properties 
>> and restarted NEO4j. 
>> I saw a reduction in the storage space for 
>> neostore.propertystore.db.strings.id 
>> <http://neostore.propertystore.db.strings.id/> but no change in 
>> neostore.propertystore.db.strings.
>> 
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