Hi Wendy

thanks so much for reaching out,

we'd love to look at the database, you can put it somewhere and send me a 
private link,

can you also run a consistency check on it?

The number reported in statistics are only the high-id-watermark not actually 
nodes,
But if you also see them in cypher with something like "match (n) return n" 
then something is off.

Michael

> Am 27.05.2015 um 07:27 schrieb Wendy Richards <[email protected]>:
> 
> Hi,
> 
> The company I am working for have a fairly large and complex database (around 
> 3.5 million nodes) that we have recently upgraded from Neo4j 1.9.4 to 2.2.1.
> 
> I am trying to export all nodes from the database to another non-neo4j 
> database for reporting. I started off by using the the excellent Neo4j Shell 
> Tools to export the entire database to GraphML format. I found that there are 
> missing nodes in the export,The neo4j web console reports a certain number of 
> nodes in the database and the export-graphml command reports that a smaller 
> number of nodes have been exported (smaller by about 85,000 nodes out of 3.5 
> million). The missing nodes appear normally in Cypher queries.
> 
> As a sanity check I wrote an application that uses the Neo4j java API and 
> found the same problem, I called GlobalGraphOperations.at(db).getAllNodes() 
> iterated over the result and got the same problem, the total number of nodes 
> is incorrect.
> 
> If I create a new database and populate it with a smaller set test data from 
> our integration tests the problem does not occur.
> 
> An investigation of the missing nodes indicates that they are scattered 
> through different node types and relationships (all of our nodes are 
> serialized from class objects using a Neo4j client).
> 
> We can supply the database in question if required.
> 
> Thanks in advance
> 
> 
> 
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