Neo4j cleans up transaction logs when it check-points, which happens at regular 
intervals some times (in minutes) after the database has started.
Have you checked that any transaction logs haven't been deleted since?

Neo4j never reduces the size of the store files; it can at best only re-use the 
space consumed by records that have been deleted.

--
Chris Vest
System Engineer, Neo Technology


> On 31 Jan 2017, at 19.11, [email protected] wrote:
> 
> Running Neo4j Community 2.3.3 on Ubuntu 14.04, I recently saw a drastic drop 
> in the total store size as reported in the browser monitor page. It went from 
> 456GB to 120GB. Roughly at that time I was re-configuring keep_logical_logs, 
> but no actual neostore.transaction.db files were deleted when I restarted 
> Neo4j. 
> 
> Our use case is such that we are constantly adding new relationships and 
> deleting old relationships based on age
> 
> Did this restart clean up deleted objects?
> 
> 
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