Can you check the signals on all 4 of the NPN bases at the same time? 
Neglecting blanking, they should look like 4 pulses, each 25% duty-cycle, 
with no overlap.

The 4th picture looks like this sequence:

   - Anode 1 on
   - Anode 1 & Anode 2 both on
   - Anodes 1,2, and 3 on
   - Anodes 1,2,3, and 4 on

The anode voltage progressively decreases, which looks like heavier loading 
on the power supply as more tubes are simultaneously on.

I checked the datasheets, and these transistors have plenty of margin, 
low-leakage, and decent switching speeds so no parasitic effects should be 
causing problems.

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